DIA overlap with margin demultiplex in MSConvert

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DIA overlap with margin demultiplex in MSConvert raghuram  2020-08-24
 

Dear Skyline team,

I had issues demultiplexing overlap with margin in MS convert. Is there any other open-source code that I can use to demultiplex overlap with margin files. And also is there a way to control demultiplexing by providing the isolation scheme?

cheers,
Bharath