We are not very familiar with this software, which seems to have its main page here:
When we build a spectral library from search results, we generally want the search engine to provide:
- Spectrum source files
- Spectrum acquisition times / retention times
We are finding it a bit challenging to find this in the pLink files you have provided in the ZIP file plink_12_maio_2020.zip which you provided. Nor do they appear to be in the proxl.xml file.
Where did you get the proxl XML converter from? Is it provided by the pLink team or the Proxl project? Have you used this XML with Proxl itself? If so, have you noticed any issues with Proxl?
There is a pLink demo on Proxl:
I am able to browse all the way to viewing spectra by clicking on a peptide and then clicking on a "View Spectrum". So, somehow Proxl seems to have gotten the spectra for these results and I see retention times reported.
However, I don't see any way of getting this information from the proxl.xml you have provided. Can you see it in there? Can you perhaps help us learn more from the providers of the tools you are using?
Thanks for your interest in testing our new cross-linked peptide support. With a little help we hope to get you past this quickly.