That .zip file contains several Agilent .d directories. When I open those in ProteoWizard SeeMS.exe, it looks like those only contain MS1 scans. Is that what they are supposed to look like?
Can you send us your Skyline document? (no Skyline document was inside of the .zip file you uploaded)
In Skyline, you can use the menu item:
File > Share > (complete)
to create a .zip file containing your Skyline document and supporting files, including whatever chromatograms Skyline managed to extract.
If that .zip file is less than 50MB then you can attach it to this support request.
Otherwise, you can upload it here: