Hi N.R.,
Can you describe more what you are looking for? Maybe provide a screenshot of exactly the colors. I can imagine our providing the colors for the multi-peptide graphs as a peptide property in either RGB or Hex format. You can get and even set these colors for transitions and precursors under Tools > Options - Display - Color Scheme, where you can choose from several available schemes or create your own, or use <Edit current...> to get the RGB and Hex values for the current color scheme.

Hope this helps. But, do provide a bit more information on what you are looking for.

--Brendan

Dear Brendan,

Thanks for your reply. The window of Targets on skyline, gives colour coding to peptides (green, amber, red) based on the transitions. I was asking if there is any way to export out the colour information given to each peptide