Library creation ms-amanda

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Library creation ms-amanda Brett Phinney  2018-08-31 15:07
 

hi everyone, has anyone been able to create a library from ms-amanda run through PD 2.2?

When I try the msf files or pdresult files I get an error about there being no q-values (I use the default ms-amanda optimized elucidator for the q-value calculation .

If I export the mzid from PD 2.2 I get a weird error invalid cvParam

Any ideas?

Cheers

Brett

 
 
Matt Chambers responded:  2018-09-03 07:13

999999 is certainly an invalid CV accession so it seems like they are writing a bogus cvParam instead of a userParam. Can you share the mzid file?