Hi Brendan, Nick,
I have two manually curated filtered target lists (FTLs) for the same cell type that I would like to merge into a single FTL. I tried importing one document into another, which generates a cumulative FTL. However, protein ACs are not merged but duplicated. How can I merge the different sets of targets that are listed as multiple protein entries into a single protein entry? I would like to merge the FTL such that I have unique (and not duplicated) protein IDs without loosing any peptides/ transitions from either of the separate documents. Can you let me know how such merging of 2 FTLs (2 separate skyline documents) can be achieved?
Thanks for your help!
Dietmar