Panorama error with Skyline daily document | Chris Ashwood | 2020-05-14 20:39 | |||||||||||||||||||||
Hi all, I hope you are well. I have been encountering a reproducible error lately, working on a Skyline document that uses the new log iRT feature. There are other niche features used including a spectral library of 500 molecules. The document itself is sensitive and sizeable (95 MB) but I can share it privately. Please find the Panorama warnings/errors below: 14 May 2020 20:23:29,961 WARN : The version of this Skyline document is 20.11. This is newer than the highest supported version 4. 14 May 2020 20:24:06,677 INFO : Done parsing Skyline document. 14 May 2020 20:24:10,809 INFO : Failed to complete task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' 14 May 2020 20:24:10,812 ERROR: SqlExecutor.execute(); uncategorized SQLException for SQL []; SQL state [25P02]; error code [0]; ERROR: current transaction is aborted, commands ignored until end of transaction block; nested exception is org.postgresql.util.PSQLException: ERROR: current transaction is aborted, commands ignored until end of transaction block Caused by: org.postgresql.util.PSQLException: ERROR: current transaction is aborted, commands ignored until end of transaction block Caused by: org.postgresql.util.PSQLException: ERROR: duplicate key value violates unique constraint "uix_auditlogentry_document" Detail: Key (documentguid, entryhash)=(577e6540-bd2e-4a40-85dd-c009a80ba168, VeCVOeCev0LQhxtTovC3nshjfOY=) already exists. 14 May 2020 20:24:10,853 ERROR: SqlExecutor.execute(); uncategorized SQLException for SQL []; SQL state [25P02]; error code [0]; ERROR: current transaction is aborted, commands ignored until end of transaction block; nested exception is org.postgresql.util.PSQLException: ERROR: current transaction is aborted, commands ignored until end of transaction block org.springframework.jdbc.UncategorizedSQLException: SqlExecutor.execute(); uncategorized SQLException for SQL []; SQL state [25P02]; error code [0]; ERROR: current transaction is aborted, commands ignored until end of transaction block; nested exception is org.postgresql.util.PSQLException: ERROR: current transaction is aborted, commands ignored until end of transaction block Caused by: org.postgresql.util.PSQLException: ERROR: current transaction is aborted, commands ignored until end of transaction block Caused by: org.postgresql.util.PSQLException: ERROR: duplicate key value violates unique constraint "uix_auditlogentry_document" Detail: Key (documentguid, entryhash)=(577e6540-bd2e-4a40-85dd-c009a80ba168, VeCVOeCev0LQhxtTovC3nshjfOY=) already exists. Cheers, |
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