A request for support wangcg1119  2020-10-07
As far as I concern, Skyline is the best choice for MS data analysis. Quality data can be obtained based on Orbitrap which is equipped with FAIMS module. We wonder whether Skyline can be employed for procession on PRM data which is generated from Orbitrap Lumos equipped with FAIMS module. If so, please kindly provide relative tutorial to support our research. 
Brian Pratt responded:  2020-10-07
We do not have any FAIMS-specific tutorials, but the general principles of ion mobility filtering apply so you may wish to begin here: https://skyline.ms/wiki/home/software/Skyline/page.view?name=tutorial_ims

Instead of drift_time_msec your ion mobility units would be compensation_V.

Feel free to respond here with any additional questions.

Thanks for using the Skyline Support Board.

Brian Pratt