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Issue 471: MaxQuant library builder fails to understand T(2) modification

issues
Status:closed
Assigned To:Guest
Type:Defect
Area:Skyline
Priority:2
Milestone:3.6
Opened:2016-07-04 10:04 by Brendan MacLean
Changed:2016-09-05 16:27 by Brendan MacLean
Resolved:2016-07-06 15:04 by Kaipo Tamura
Resolution:Fixed
Closed:2016-09-05 16:27 by Brendan MacLean
2016-07-04 10:04 Brendan MacLean
Title»MaxQuant library builder fails to understand T(2) modification
Assigned To»kaipot@u.washington.edu
Type»Defect
Area»Skyline
Priority»2
Milestone»3.6
This was reported by a user in a support request:

https://skyline.gs.washington.edu/labkey/announcements/home/support/thread.view?entityId=2ccce028-240e-1034-87f8-da20258210fe

The function MaxQuantReader::searchForMod() makes too strong assumptions about modification abbreviations being 2 characters long. It should be looking for the close parenthesis.
2016-07-06 15:04 Kaipo Tamura
resolve as Fixed
Statusopen»resolved
Assigned Tokaipot@u.washington.edu»Brendan MacLean
Committed a fix for this in r9874
2016-09-05 16:27 Brendan MacLean
close
Statusresolved»closed
Assigned ToBrendan MacLean»Guest