Issue 1029: Integrate Carafe into Peptide Settings - Library

issues

Closed:

2026-01-06 13:22 by Brendan MacLean

Related Issues

Issue ID Sort Ascending Sort Descending Clear Sort Filter... Clear Filter	Type Sort Ascending Sort Descending Clear Sort Filter... Clear Filter	Area Sort Ascending Sort Descending Clear Sort Filter... Clear Filter	Title Sort Ascending Sort Descending Clear Sort Filter... Clear Filter	Assigned To Sort Ascending Sort Descending Clear Sort Filter... Clear Filter	Priority Sort Ascending Sort Descending Clear Sort Filter... Clear Filter	Status Sort Ascending Sort Descending Clear Sort Filter... Clear Filter	Milestone Sort Ascending Sort Descending Clear Sort Filter... Clear Filter
1028	Todo	Skyline	Integrate AlphaPeptDeep prediction into Peptide Settings - Library - Build	Guest	2	closed	24.2

2024-07-09 10:35

Brendan MacLean

Title	»	Integrate Carafe into Peptide Settings - Library - Build
Assigned To	»	xgwang
Notify	»	Nick Shulman
Type	»	Todo
Area	»	Skyline
Priority	»	2
Milestone	»	24.2
Related	»	1028

After AlphaPeptDeep has been integrated, we would like to add support for prediction libraries with Carafe (Bo Wen's new tool).

Here is a spec that covers both:
https://docs.google.com/presentation/d/1M0_K3K8X9vNeRmOfqNtDWGxJH9b15CnshnE8OUFnTqo/edit?usp=sharing

PR 3033 implements the draft UI:
https://github.com/ProteoWizard/pwiz/pull/3033

2026-01-06 13:21

Brendan MacLean

resolve as GitHub Move

Status	open	»	resolved
Assigned To	xgwang	»	Brendan MacLean

Skyline issues have moved to GitHub Issues at https://github.com/ProteoWizard/pwiz/issues
Issues will be ported as necessary for active work.

2026-01-06 13:22

Brendan MacLean

close

Status	resolved	»	closed
Assigned To	Brendan MacLean	»	Guest