Matt, we need to create a variant on what you implemented for DIA-NN for Bruker Paser in BlibBuild.
The Van Eyk lab at Cedars Sinai is sharing data with us for this here:
https://panoramaweb.org/MacCoss/brendan/Transfer/Cedars/project-begin.view
I gave you permission to access this folder.
I think the file organization is very similar to DIA-NN with the following equivalencies:
1. Canonical Library: _ip2_ip2_data_paser_spectral_library_<lib-name>.tsv => <name>.speclib
2. Search Result: <search-name>_result.tsv => <name>.*.tsv
Where the _ip2_ip2_data_paser_spectral_library_<lib-name>.tsv format is a derivative of the TSVReader.cpp format without any analysis file information.
It has also become clear that what is implemented for DIA-NN is less than ideal because it starts with a canonical library and goes out looking for the best matching search result in the folder with that library. However, the relationship between the canonical library and search results files is intentionally one to many. You are not necessarily expected to be able to find a single "best" search result file from the library in a folder.
Though, certainly, you might be able to, and you can also certainly build a blib file entirely from the canonical library without any detailed search results information.
It's tricky, but we need to keep working on both DIA-NN and Paser support, and fortunately, we have great collaborators for this work.