Issue 916: Document normalization methods

Status:open
Assigned To:Nick Shulman
Type:Documentation
Area:Skyline
Priority:2
Milestone:22.2
Opened:2022-10-20 10:45 by Brendan MacLean
Changed:2022-10-20 10:45 by Brendan MacLean
Resolved:
Resolution:
Closed:
2022-10-20 10:45 Brendan MacLean
Title»Document normalization methods
Assigned To»Nick Shulman
Type»Documentation
Area»Skyline
Priority»2
Milestone»22.2
We need a wiki page under Tips > Quantification > Normalization that explains all the various types of normalization that we support.

At least:
Ratio to reference standards (light:heavy)
Ratio to surrogate standards (area:surrogate)
Ratio to global standards (area:global)
Median normalization (area * median area / median of median areas)
Median normalization with reference standards (area * median heavy area / median of median heavy areas)
TIC normalization (area * TIC / median TIC)

Maybe also explaining the difference between peptides, proteins, and molecules. And Tukey's Median Polish.