Title | | » | Failed importing results DIA |
Assigned To | Guest | » | Brendan MacLean |
Type | | » | Defect |
Area | | » | Skyline |
Priority | | » | 3 |
Dear,
I'm importing results file for DIA through command line, but don't get any further than 40%. I'm using skyline Daily 19.1.1.283; import mzML file.
Any idea what is wrong?
The following error appears:
Error: Failed importing the results file H08127_uPAC_CMB-233_DIA_Plasma_Depleted_Rep-1.mzML.
[2019/10/25 17:48:57] Message: System.IO.IOException: Error: Failed importing the results file Importing H08127_uPAC_CMB-233_DIA_Plasma_Depleted_Rep-1.mzML.
Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\An\Skyline\Data\H08127_uPAC_CMB-233_DIA_Plasma_Depleted_Rep-1.mzML'.
Win32 Error: 80 ---> System.IO.IOException: Win32 Error: 80 ---> System.IO.IOException: Win32 Error: 80
at pwiz.Skyline.Util.FileStreamManager.GetTempFileName(String basePath, String prefix, UInt32 unique) in C:\proj\pwiz_x64\pwiz_tools\Skyline\Util\UtilIO.cs:line 788
at pwiz.Skyline.Util.FileStreamManager.GetTempFileName(String basePath, String prefix) in C:\proj\pwiz_x64\pwiz_tools\Skyline\Util\UtilIO.cs:line 760
at pwiz.Skyline.Model.Results.ChromGroups.SpillFile.<>c__DisplayClass9_0.<CreateFileStream>b__0() in C:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCollector.cs:line 700
at pwiz.Skyline.Util.Helpers.Try[TEx](Action action, Int32 loopCount, Int32 milliseconds) in C:\proj\pwiz_x64\pwiz_tools\Skyline\Util\Util.cs:line 1869
at pwiz.Skyline.Model.Results.ChromGroups.SpillFile.CreateFileStream(String cachePath) in C:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCollector.cs:line 698
at pwiz.Skyline.Model.Results.ChromGroups.GetFileStream(Int32 chromIndex) in C:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCollector.cs:line 577
at pwiz.Skyline.Model.Results.BlockWriter.WriteBlock(Int32 chromatogramIndex, IBlockedList blockedList) in C:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCollector.cs:line 443
at pwiz.Skyline.Model.Results.BlockedList`1.Add(Int32 chromatogramIndex, TData data, BlockWriter writer) in C:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCollector.cs:line 202
at pwiz.Skyline.Model.Results.ChromCollector.AddPoint(Int32 chromatogramIndex, Single intensity, Nullable`1 massError, BlockWriter writer) in C:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCollector.cs:line 78
at pwiz.Skyline.Model.Results.ChromDataCollectorSet.ProcessExtractedSpectrum(Single time, Collectors chromatograms, Int32 scanId, ExtractedSpectrum spectrum, Action`2 addCollector) in C:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\SpectraChromDataProvider.cs:line 1476
at pwiz.Skyline.Model.Results.SpectraChromDataProvider.ProcessSpectrumList(MsDataSpectrum[] spectra, ChromDataCollectorSet chromMap, Single rt, SpectrumFilter filter, String scanId) in C:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\SpectraChromDataProvider.cs:line 497
at pwiz.Skyline.Model.Results.SpectraChromDataProvider.ExtractChromatogramsLocked() in C:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\SpectraChromDataProvider.cs:line 331
at pwiz.Skyline.Model.Results.SpectraChromDataProvider.ExtractChromatograms() in C:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\SpectraChromDataProvider.cs:line 217
at pwiz.Skyline.Model.Results.SpectraChromDataProvider.<SetRequestOrder>b__46_0() in C:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\SpectraChromDataProvider.cs:line 561
--- End of inner exception stack trace ---
Thank you for looking into this.
Kind regards,
An