Issue 628: Thermo RAW attribute access

issues
Status:resolved
Assigned To:matt.chambers42@gmail.com
Type:Todo
Area:Skyline
Priority:3
Milestone:4.3
Opened:2019-01-16 by matt.chambers42
Changed:2019-10-04 by Nick Shulman
Resolved:2019-10-04 by Nick Shulman
Resolution:Fixed
Duplicates:523
Closed:
2019-01-16 matt.chambers42
Title»Thermo RAW attribute access
Assigned ToGuest»matt.chambers42@gmail.com
Type»Todo
Area»Skyline
Priority»3
Milestone»4.3
Jaffe lab has requested the ability to automatically set replicate attribute based on some properties in the Thermo RAW file header. ProteoWizard can write these properties to the MSData fileContent section as userParams if they are present and/or non-empty, where Skyline can look for them and use them appropriately.

2019-02-21 matt.chambers42
Notify»Brendan MacLean
Brendan, who do I ask what attributes in a RAW file they want me to use? I looked at the example RAWs you sent but nothing popped out at me in the file headers.

2019-02-21 Brendan MacLean
NotifyBrendan MacLean»Brendan MacLean;jjaffe;Nick Shulman
Jake Jaffe, now included was the original source of this request. He wanted to be able to have sample attributes set in his raw files imported directly into Skyline custom attributes.

2019-03-11 matt.chambers42
Jake, can you point me at some raw files and tell me which attribute you want to access?

2019-05-08 matt.chambers42
Assigned Tomatt.chambers42@gmail.com»Nick Shulman
NotifyBrendan MacLean;jjaffe;Nick Shulman»Brendan MacLean;jjaffe
Per https://github.com/ProteoWizard/pwiz/pull/494 , Nick will handle integrating the attribute access into Skyline.

2019-05-08 matt.chambers42
Issue 523 marked as duplicate of this issue.
2019-10-04 Nick Shulman
resolve as Fixed
Statusopen»resolved
Assigned ToNick Shulman»matt.chambers42@gmail.com
This got committed to the Skyline-Daily branch on Sept 23. (We haven't had a Skyline-Daily release with this in it yet, but we will soon).