Issue 608: Conflict with transition Ion exception when two precursors have the same charge state, and transitions with the same mass.

issues
Status:closed
Assigned To:Guest
Type:Defect
Area:Skyline
Priority:3
Milestone:4.3
Opened:2018-11-06 by Nick Shulman
Changed:2018-12-10 by Nick Shulman
Resolved:2018-12-10 by Nick Shulman
Resolution:Fixed
Closed:2018-12-10 by Nick Shulman
2018-11-06 Nick Shulman
Title»Conflict with transition Ion exception when two precursors have the same charge state, and transitions with the same mass.
Assigned ToGuest»Nick Shulman
Type»Defect
Area»Skyline
Priority»3
Milestone»4.3
From the exception web:

1. Open .sky.zip file in:
/_webdav/home/issues/files/%40files/bug608/
2. Import .wiff file from that folder
3. Result:
Exception type: System.IO.InvalidDataException
Error message: Conflict with transition Ion XXXX+ in XXXX for peak area calculation. Did you mean to use a different precursor charge state or label?
Conflict with transition Ion XXXX+ in XXXX for peak area calculation. Did you mean to use a different precursor charge state or label?
   at pwiz.Skyline.Model.PeptideDocNode.PeptideChromInfoCalculator.AddChromInfo(TransitionGroupDocNode nodeGroup, TransitionDocNode nodeTran, TransitionChromInfo info) in C:\proj\skyline_4_2_x64\pwiz_tools\Skyline\Model\PeptideDocNode.cs:line 1657
   at pwiz.Skyline.Model.PeptideDocNode.PeptideChromInfoListCalculator.AddChromInfoList(TransitionGroupDocNode nodeGroup, TransitionDocNode nodeTran) in C:\proj\skyline_4_2_x64\pwiz_tools\Skyline\Model\PeptideDocNode.cs:line 1413
   at pwiz.Skyline.Model.PeptideDocNode.PeptideResultsCalculator.AddGroupChromInfo(TransitionGroupDocNode nodeGroup) in C:\proj\skyline_4_2_x64\pwiz_tools\Skyline\Model\PeptideDocNode.cs:line 1209
   at pwiz.Skyline.Model.PeptideDocNode.UpdateResults(SrmSettings settingsNew) in C:\proj\skyline_4_2_x64\pwiz_tools\Skyline\Model\PeptideDocNode.cs:line 1116
   at pwiz.Skyline.Model.PeptideDocNode.ChangeSettings(SrmSettings settingsNew, SrmSettingsDiff diff, Boolean recurse) in C:\proj\skyline_4_2_x64\pwiz_tools\Skyline\Model\PeptideDocNode.cs:line 928

2018-12-10 Nick Shulman
resolve as Fixed
Statusopen»resolved
This got fixed with this pull request:
https://github.com/ProteoWizard/pwiz/pull/319

2018-12-10 Nick Shulman
close
Statusresolved»closed
Assigned ToNick Shulman»Guest