Issue 547: XML Error -- Reading mz values; small molecule transition list

issues
Status:resolved
Assigned To:Brian Pratt
Type:Defect
Area:Skyline
Priority:3
Milestone:4.1
Opened:2017-09-26 by lwolfe_colostate
Changed:2017-11-02 by Brian Pratt
Resolved:2017-11-02 by Brian Pratt
Resolution:Fixed
Closed:
2017-09-26 lwolfe_colostate
Title»XML Error -- Reading mz values; small molecule transition list
Assigned ToGuest»Brendan MacLean
Notify»lwolfe_colostate
Type»Defect
Area»Skyline
Priority»3
Milestone»4.1
I created a document in Skyline Daily v.3.7.1.11357 using the Import > Transition List workflow.
I have a list of small molecules some of which are being detected by parent to parent mz (i.e. SIM/SIR scan). I have accurate mass in the parent column and not accurate mass in the fragment column (89.0124 > 89). Check for Errors passes in the transition table and the target list is created. I can save the file with imported data or without data, no problem. When I go to re-open the file, the attached XML error occurs and the file will not open. I was able to fix the issue after reading through the Error text, so that 's not a problem. I think the issue is with the Check Errors feature in the Insert Transition Table. It could flag that as an error prior to inserting the target list. This was an issue when I had imported a large data set and wasn't able to re-open the file.

Thanks,
Lisa
 
 FileOpenError-SkylineDaily v3.7.1.11357.txt
 092217_RKrisher_MediaMetaboliteQuant-template.sky
 092217_RKrisher_MediaMetaboliteQuant-template.sky.view

2017-09-26 Brendan MacLean
Assigned ToBrendan MacLean»Brian Pratt
Looks like yours, Brian.

2017-11-02 Brian Pratt
resolve as Fixed
Statusopen»resolved
Assigned ToGuest»Brian Pratt
Fixed in branches/work/20171019_merck_daily and merged to trunk in SVN 11482