Issue 41: Editing protein names for "fully backed" fasta proteins.

issues
Status:closed
Assigned To:Guest
Type:Defect
Area:Skyline
Priority:3
Milestone:1.2
Opened:2011-07-07 by Brendan MacLean
Changed:2013-08-09 by Brendan MacLean
Resolved:2013-08-09 by Brendan MacLean
Resolution:Fixed
Closed:2013-08-09 by Brendan MacLean
2011-07-07 Brendan MacLean
Title»Editing protein names for "fully backed" fasta proteins.
Assigned To»Brendan MacLean
Type»Defect
Area»Skyline
Priority»3
Milestone»1.2
2009-07-08    Nathan Yates
he fasta proteins I pasted contain MOUSE at the beginning of the description. Thus, all of the proteins show the same name in Skyline. I can easily edit the FASTA file and repaste the sequences into Skyline, but it would be more conveinent to edit the name in Skyline.

2009-07-08    Brendan
Okay, not a problem. I tend to think of these as useful IDs like IPI numbers, which probably shouldn't change much, but I guess that is only the case for very well defined FASTA files.

2009-07-08    Brendan
One thing about the case you describe is that returning to the FASTA with a text editor would allow you to do a fairly quick bulk find and replace of ">MOUSE" with ">". It is likely to be a while before you can do something comparable in the Skyline editing UI. And of course you can undo the original paste with one button click or Ctrl-z.

2012-08-06 Brendan MacLean
Assigned ToBrendan MacLean»saj9191

2013-08-09 Brendan MacLean
resolve as Fixed
Statusopen»resolved
Assigned Tosaj9191»Brendan MacLean
Shannon implemented a fix for this last year.

2013-08-09 Brendan MacLean
close
Statusresolved»closed
Assigned ToBrendan MacLean»Guest