Issue 396: Naming convention for peptides in Thermo Quantiva transition list export

issues
Status:closed
Assigned To:Guest
Type:Todo
Area:Skyline
Priority:3
Milestone:3.1
Opened:2015-01-23 by Susan Abbatiello
Changed:2015-11-07 by Brendan MacLean
Resolved:2015-10-12 by Kaipo
Resolution:Fixed
Closed:2015-11-07 by Brendan MacLean
2015-01-23 Susan Abbatiello
Title»Naming convention for peptides in Thermo Quantiva transition list export
Assigned To»kaipot@u.washington.edu
Type»Todo
Area»Skyline
Priority»3
Milestone»3.1
Hi there!

I'd like to request a change to the peptide naming convention in the Thermo Quantiva transition list export.

Would it be possible to add "(light)", "(heavy)" or other user-defined isotopic modification to the peptide sequence that populates the "Compound" column in the transition list export? Right now, if there are more than 10 transitions with the same compound name, Skyline adds a number, incrementally, for each set of 10 transitions. This causes the transitions to split up into different scan headers for light and heavy peptide pairs.

I showed Brendan an example today, but can transfer transition lists and .raw files if you need them.

Best,
Sue

2015-10-12 Kaipo
resolve as Fixed
Statusopen»resolved
fixed in r7323

2015-11-07 Brendan MacLean
close
Statusresolved»closed
Assigned Tokaipot@u.washington.edu»Guest