Issue 352: Annotate reporter ions in Library Match graph

issues
Status:open
Assigned To:Brian Pratt
Type:Todo
Area:Skyline
Priority:2
Milestone:19.2
Opened:2014-10-21 by raghothama
Changed:2019-06-14 by Brian Pratt
Resolved:
Resolution:
Related:34
Closed:
Related Issues
2014-10-21 raghothama
Title»Reporter ions
Assigned To»Brendan MacLean
Type»Documentation
Area»Skyline
Priority»3
I have included TMT-reporter ion (example 129L)under transition settings. However, peak corresponding to 129L is not selected under transitions. It will be very useful for reporter ion based quantitation on skyline.

Thanks a lot
Raghothama
 
 Issue.jpg

2014-10-21 Brendan MacLean
Assigned ToBrendan MacLean»bspratt
TypeDocumentation»Todo
Milestone»3.1
Good point. It would be nice to annotate the reporter ions in the MS/MS library spectra. Let's try to do this for the next release.

2015-06-24 Brendan MacLean
TitleReporter ions»Annotate reporter ions in Library Match graph
Priority3»2

2017-06-08 Brendan MacLean
Milestone3.1»

2017-06-12 Brendan MacLean
Milestone»4.1
Related»34
I think this would be a good place to employ Tobi when he first starts on the project. Get him to work on expanding the options for ion annotation in the Library Match view, first to include reporter ions and then all small molecule transitions in the document, and finally small molecule annotations in .blib files, assuming you can get that done in time.

But start him with just the "Special Ions" that can be added in the Transition Settings - Filter tab.

There is another related issue (34) from a very long time ago requesting that we show immonium ions. So, I expect this could be an are of focus for Tobi for a few weeks at least.

2019-06-14 Brian Pratt
Milestone4.1»19.2