Issue 342: Spectral Library Explorer and MS1 Analysis

issues
Status:open
Assigned To:Brendan MacLean
Type:Defect
Area:Skyline
Priority:3
Milestone: 
Opened:2014-08-20 by Scott Goulding
Changed:2014-08-28 by Brendan MacLean
Resolved:
Resolution:
Closed:
2014-08-20 Scott Goulding
Title»Spectral Library Explorer and MS1 Analysis
Assigned To»Brendan MacLean
Type»Defect
Area»Skyline
Priority»3
Milestone»2.6
Hey Brendan,

I've been spending a lot of time using Skyline to perform MS1 analyses and I recently discovered a place for possible future improvement. After importing peptides from a spectral library, I noticed some peptides with ragged ends even though I checked the box to exclude potential ragged ends. Nick looked into this and found that the only features the Spectral Library Explorer takes into account are missed cleavages and precursor charge. I think it would be beneficial if Skyline could also take into account additional peptide and transition filtering options such as the exclusion of ragged ends and peptide length. Otherwise, I find Skyline's ability to perform MS1 analysis very good.

Sincerely,

Scott Goulding

2014-08-28 Brendan MacLean
Milestone2.6»