Issue 314: Support modifications not associated with an amino acid in SSL format for spectral library building

issues
Status:closed
Assigned To:Guest
Type:Defect
Area:Skyline
Priority:2
Milestone:3.1
Opened:2014-03-04 by Brendan MacLean
Changed:2016-09-05 by Brendan MacLean
Resolved:2014-10-23 by Kaipo
Resolution:Fixed
Closed:2016-09-05 by Brendan MacLean
2014-03-04 Brendan MacLean
Title»Support modifications not associated with an amino acid in SSL format for spectral library building
Assigned To»kaipot@u.washington.edu
Type»Defect
Area»Skyline
Priority»3
Milestone»2.6
Apparently, SSL format from various sources may have peptide terminal modifications specified outside what we use internally. We should handle these and convert them to something that makes sense for us.

The following should be synonyms, with the lower formats converted to the top formats in both cases.

PEPTIDE[+123.456]
PEPTIDE-[+123.456]

and

P[+123.456]EPTIDE
[+123.456]PEPTIDE
[+123.456]-PEPTIDE

2014-08-28 Brendan MacLean
Priority3»2
Milestone2.6»3.1

2014-10-23 Kaipo
resolve as Fixed
Statusopen»resolved
Assigned Tokaipot@u.washington.edu»Brendan MacLean
committed in r6837

2016-09-05 Brendan MacLean
close
Statusresolved»closed
Assigned ToBrendan MacLean»Guest