Issue 256: Fix normalized CE column for Q Exactive isolation list export

Status:closed
Assigned To:Guest
Type:Defect
Area:Skyline
Priority:2
Milestone:2.1
Opened:2013-07-30 by Brendan MacLean
Changed:2013-08-19 by Brendan MacLean
Resolved:2013-08-19 by Brendan MacLean
Resolution:Fixed
Closed:2013-08-19 by Brendan MacLean
2013-07-30 Brendan MacLean
Title»Fix normalized CE column for Q Exactive isolation list export
Assigned To»donmarsh@proteinms.net
Type»Defect
Area»Skyline
Priority»2
Milestone»2.1
Currently, the Q Exactive isolation list export is using actual CE values calculated from the Transition Settings - Prediction tab, Collision energy setting for the nCE column in the isolation list. This column, however, is supposed to be normalized collision energy, and will typically have the same value for all rows in this list. I am told that the MacCoss lab may be using 25 for this value in most cases.

We need to figure out what a good default value is for this field, and then just set it consistently. People can always change it outside Skyline using Excel, but the current implementation is confusing, and recently inspired a support request:

https://skyline.gs.washington.edu/labkey/announcements/home/support/thread.view?rowId=5053

2013-08-19 Brendan MacLean
resolve as Fixed
Statusopen»resolved
Assigned Todonmarsh@proteinms.net»Brendan MacLean
I fixed this.

2013-08-19 Brendan MacLean
close
Statusresolved»closed
Assigned ToBrendan MacLean»Guest