1. Issues List

Issue 190: Add library building support for Proteome Discoverer native .msf files

issues
Status:closed
Assigned To:Guest
Type:Todo
Area:BiblioSpec
Priority:3
Milestone: 
Opened:2012-09-12 by Brendan MacLean
Changed:2013-04-02 by Brendan MacLean
Resolved:2013-04-02 by Brendan MacLean
Resolution:Fixed
Closed:2013-04-02 by Brendan MacLean
2012-09-12 Brendan MacLean
Title»Add library building support for Proteome Discoverer native .msf files
Assigned To»Brendan MacLean
Type»Todo
Area»BiblioSpec
Priority»3
We currently support building libraries from Proteome Discoverer results, but only if a user exports pepXML/mzXML. It would be better to support native .msf files without needing to export.

We have had some trouble decoding the spectrum blobs, but Scaffold does it, and they have told us that the blobs are ZIP compressed.
2012-10-24 Brendan MacLean
Here is an Apache 2.0 licensed open source project with support for opening MSF files:

http://code.google.com/p/thermo-msf-parser/
2013-01-17 Brendan MacLean
Assigned ToBrendan MacLean»kaipot@u.washington.edu
2013-04-02 Brendan MacLean
resolve as Fixed
Statusopen»resolved
Assigned Tokaipot@u.washington.edu»Brendan MacLean
Kaipo implemented this.
2013-04-02 Brendan MacLean
close
Statusresolved»closed
Assigned ToBrendan MacLean»Guest