Issue 170: Correct peptide start and end indices to use 1-based indexing instead of 0-base indexing

issues
Status:open
Assigned To:Brendan MacLean
Type:Todo
Area:Skyline
Priority:3
Milestone: 
Opened:2012-05-09 by Brendan MacLean
Changed:2014-01-08 by Brendan MacLean
Resolved:
Resolution:
Closed:
2012-05-09 Brendan MacLean
Title»Correct peptide start and end indices to use 1-based indexing instead of 0-base indexing
Assigned To»Brendan MacLean
Notify»mrardin@buckinstitute.org jheld@buckinstitute.org bschilling@buckinstitute.org
Type»Defect
Area»Skyline
Priority»3
Milestone»2.1
It turns out that many proteomics resources use a 1-based index when referring to peptide location within a protein. Skyline has been using a 0-based index, and so appears to be off-by-one to many proteomics scientists. This should be fixed in some way, either by converting everything to the 1-based scale, or by making it an option to see the 1-based values.

2013-08-26 Brendan MacLean
TypeDefect»Todo

2014-01-08 Brendan MacLean
Notifymrardin;jheld@buckinstitute.org;Birgit Schilling»
Milestone2.1»
Still a painful one. Should probably do it sometime, though.