Issue 153: Error message during generation of Results by Cohort output

issues
Status:closed
Assigned To:Guest
Type:Defect
Area:Topograph
Priority:2
Milestone:1.2
Opened:2012-02-14 by Evvie Vincow
Changed:2017-10-18 by Brendan MacLean
Resolved:2017-10-18 by Brendan MacLean
Resolution:Won't Fix
Closed:2017-10-18 by Brendan MacLean
2012-02-14 Evvie Vincow
Title»Error message during generation of Results by Cohort output
Assigned To»nicksh@u.washington.edu
Type»Defect
Area»Topograph
Priority»2
Milestone»1.2
Topograph threw an exception while I was trying to export Results by Cohort data from the October 2011 Parkin workspace (by peptide, by replicate). The exception text is below. I tried recalculating the output, and it threw the same exception after maybe 1500 "final results." I'm not sure whether or not I'm getting the full output. Please let me know ASAP.


2/14/2012 4:01:29 PM    Unhandled exception    System.ApplicationException: An exception occurred running the job ---> System.OutOfMemoryException: Exception of type 'System.OutOfMemoryException' was thrown.
   at System.Linq.Buffer`1..ctor(IEnumerable`1 source)
   at System.Linq.Enumerable.ToArray[TSource](IEnumerable`1 source)
   at pwiz.Common.Chemistry.MassDistribution.NewInstance(IDictionary`2 values, Double massResolution, Double minimumAbundance)
   at pwiz.Common.Chemistry.MassDistribution.Add(MassDistribution rhs)
   at pwiz.Common.Chemistry.AminoAcidFormulas.GetMassDistribution(Molecule molecule, Int32 charge)
   at pwiz.Topograph.Enrichment.TurnoverCalculator.GetMasses()
   at pwiz.Topograph.Enrichment.TurnoverCalculator..ctor(Workspace workspace, String sequence)
   at pwiz.Topograph.MsData.HalfLifeCalculator.GetTurnoverCalculator(String peptideSequence)
   at pwiz.Topograph.MsData.HalfLifeCalculator.ComputeAvgTurnover(RawRowData rowData)
   at pwiz.Topograph.MsData.HalfLifeCalculator.FilterCohort(IList`1 rowDatas, String cohort)
   at pwiz.Topograph.MsData.HalfLifeCalculator.CalculateResultRow(List`1 rowDatas)
   at pwiz.Topograph.MsData.HalfLifeCalculator.Run(LongOperationBroker longOperationBroker)
   at pwiz.Topograph.Util.LongOperationBroker.RunJobBackground()
   --- End of inner exception stack trace ---
   at pwiz.Topograph.Util.LongOperationBroker.LaunchJob()
   at pwiz.Topograph.ui.Forms.ResultsPerGroupForm.btnRequery_Click(Object sender, EventArgs e)
   at System.Windows.Forms.Control.OnClick(EventArgs e)
   at System.Windows.Forms.Button.OnClick(EventArgs e)
   at System.Windows.Forms.Button.OnMouseUp(MouseEventArgs mevent)
   at System.Windows.Forms.Control.WmMouseUp(Message& m, MouseButtons button, Int32 clicks)
   at System.Windows.Forms.Control.WndProc(Message& m)
   at System.Windows.Forms.ButtonBase.WndProc(Message& m)
   at System.Windows.Forms.Button.WndProc(Message& m)
   at System.Windows.Forms.Control.ControlNativeWindow.OnMessage(Message& m)
   at System.Windows.Forms.Control.ControlNativeWindow.WndProc(Message& m)
   at System.Windows.Forms.NativeWindow.Callback(IntPtr hWnd, Int32 msg, IntPtr wparam, IntPtr lparam)
Exception caught at:
   at pwiz.Topograph.ui.Program.Application_ThreadExceptionEventHandler(Object sender, ThreadExceptionEventArgs e)
   at System.Windows.Forms.Application.ThreadContext.OnThreadException(Exception t)
   at System.Windows.Forms.Control.WndProcException(Exception e)
   at System.Windows.Forms.Control.ControlNativeWindow.OnThreadException(Exception e)
   at System.Windows.Forms.NativeWindow.Callback(IntPtr hWnd, Int32 msg, IntPtr wparam, IntPtr lparam)
   at System.Windows.Forms.UnsafeNativeMethods.DispatchMessageW(MSG& msg)
   at System.Windows.Forms.Application.ComponentManager.System.Windows.Forms.UnsafeNativeMethods.IMsoComponentManager.FPushMessageLoop(Int32 dwComponentID, Int32 reason, Int32 pvLoopData)
   at System.Windows.Forms.Application.ThreadContext.RunMessageLoopInner(Int32 reason, ApplicationContext context)
   at System.Windows.Forms.Application.ThreadContext.RunMessageLoop(Int32 reason, ApplicationContext context)
   at System.Windows.Forms.Application.Run(Form mainForm)
   at pwiz.Topograph.ui.Program.Main()


2017-10-18 Brendan MacLean
resolve as Won't Fix
Statusopen»resolved
Assigned ToNick Shulman»Evvie Vincow
Not really maintaining Topograph any longer.

2017-10-18 Brendan MacLean
close
Statusresolved»closed
Assigned ToEvvie Vincow»Guest