Issue 11: Background proteome build fails with large FASTA file

issues
Status:closed
Assigned To:Guest
Type:Defect
Area:Skyline
Priority:4
Milestone: 
Opened:2011-07-07 by Brendan MacLean
Changed:2013-08-09 by Brendan MacLean
Resolved:2013-08-09 by Brendan MacLean
Resolution:Won't Fix
Closed:2013-08-09 by Brendan MacLean
2011-07-07 Brendan MacLean
Title»Background proteome build fails with large FASTA file
Assigned To»nicksh@u.washington.edu
Type»Defect
Area»Skyline
Priority»4
An investigator using Skyline has reported that Skyline hangs trying to build a background proteome for the entire uniprot FASTA file. I tried it, and on my machine it ran out of memory during digestion.

https://brendanx-uw1.gs.washington.edu/labkey/announcements/home/support/thread.view?entityId=c8b436f7-eb34-102d-bef1-b92612318fc9&_anchor=887#row:887

Would be nice to be able to raise the ceiling on this limit a bit.

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Not sure if this is just really old Google caching, or we never addressed this.

2013-08-09 Brendan MacLean
resolve as Won't Fix
Statusopen»resolved
Assigned ToNick Shulman»Brendan MacLean
Not making progress on fixing this, and not many people have complained.

2013-08-09 Brendan MacLean
close
Statusresolved»closed
Assigned ToBrendan MacLean»Guest