Issue 662: Add View > Peptides > By menu items

issues
Status:closed
Assigned To:Guest
Type:Todo
Area:Skyline
Priority:3
Milestone:19.2
Opened:2019-07-01 11:05 by Brendan MacLean
Changed:2020-03-10 11:45 by Brendan MacLean
Resolved:2020-03-10 11:45 by Nick Shulman
Resolution:Fixed
Closed:2020-03-10 11:45 by Brendan MacLean
2019-07-01 11:05 Brendan MacLean
Title»Add View > Peptides > By menu items
Assigned ToGuest»Brendan MacLean
Type»Todo
Area»Skyline
Priority»3
Milestone»19.2
A user working with glyco peptides pointed out how difficult it is to differentiate between peptides with the same modified amino acid residues, but modified differently.

https://skyline.ms/announcements/home/support/thread.view?rowId=40608

We need to add the ability to show identifiable text for modifications in the Targets view. Something like below should not be too hard and should meet the need.

View > Peptides >
    By Sequence = PEPTIMER
    By Modified Sequence = PEPT[+80]IM[+16]ER
    By Modified Sequence Masses = PEPT[+79.966331]IM[+15.994915]ER
    By Modified Sequence Codes = PEPT[Pho]IM[Oxi]ER
    By Modified Sequence Full Names = PEPT[Phospho (ST)]IM[Oxidation (M)]ER
    By Modified Sequence Unimod Ids = PEPT(unimod:21)IM(unimod:35)ER

2020-03-09 16:08 Brendan MacLean
Assigned ToBrendan MacLean»Nick Shulman
I think you did this work.

2020-03-10 11:45 Nick Shulman
resolve as Fixed
Statusopen»resolved
Assigned ToNick Shulman»Brendan MacLean
Yes, this feature was covered by Issue #675.

2020-03-10 11:45 Brendan MacLean
close
Statusresolved»closed
Assigned ToBrendan MacLean»Guest