Issue 530: NIST .msp reader ignores peptide entries with n- or c-terminal modifications

Status:open
Assigned To:Kaipo Tamura
Type:Defect
Area:Skyline
Priority:3
Milestone:4.3
Opened:2017-07-06 15:16 by Brian Pratt
Changed:2019-09-15 14:43 by Brendan MacLean
Resolved:
Resolution:
Closed:
2017-07-06 15:16 Brian Pratt
Title»NIST .msp reader ignores peptide entries with n- or c-terminal modifications
Assigned To»kaipot@u.washington.edu
Type»Defect
Area»Skyline
Priority»3
Milestone»4.1
I noticed this in one of our test examples while extending the NIST MSP reader to handle small molecules. Here's the top of the file - the first entry is ignored because of that "n[43]".

### human_b2mg-5-06-2009-it.sptxt (Text version of human_b2mg-5-06-2009-it.splib)
### SpectraST (version 3.1, TPP v4.2 JETSTREAM (unstable dev prerelease) rev 0, Build 200901121330 (MSVC))
###
### IMPORT FROM MSP "c:/proteomics/yeast/spectrast/human_b2mg_consensus_final_true_lib.msp"
### ===
Name: n[43]ALAVLALLSLSGLEAIQR/5
LibID: 0
MW: 1884.1506
PrecursorMZ: 376.8301
Status: Normal
FullName: V.n[43]ALAVLALLSLSGLEAIQR.T/5
etc

2019-09-15 14:43 Brendan MacLean

2019-09-15 14:43 Brendan MacLean
Milestone4.1»