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Issue 266: Fail to create peptide library by using .mzid file from MSGF+ searching result!

issues
Status:closed
Assigned To:Guest
Type:Defect
Area:Skyline
Priority:2
Milestone:2.5
Opened:2013-10-09 16:16 by Chaochao
Changed:2017-10-18 08:35 by Brendan MacLean
Resolved:2014-04-15 09:12 by Kaipo Tamura
Resolution:Fixed
Closed:2017-10-18 08:35 by Brendan MacLean
2013-10-09 16:16 Chaochao
Title»Fail to create peptide library by using .mzid file from MSGF+ searching result!
Assigned To»Brendan MacLean
Notify»Chaochao
Type»Defect
Area»Skyline
Priority»3
Milestone»2.1
Hi Brendan,

I tried to use Skyline to create peptide library from .mzid file (MSGF+ result), but Skyline failed and reported an error "No spectra were found for the new library".
However, when I converted .mzid file into .pepXML, it succeeded.
I wonder if this is a small bug. Tell me if you need any further information or file.
Thanks for your help!

Chaochao
2013-10-09 16:23 Brendan MacLean
Assigned ToBrendan MacLean»kaipot@u.washington.edu
Priority3»2
Milestone2.1»2.2
Seems like PNNL is interested in building spectral libraries for Skyline, but running into issues building them directly from mzIdentML. Ideally, it seems they would want to build them from mzIdentML and raw data files, but it doesn't seem to work for mzIdentML and mzXML or mzML.

We should try to get this working better for them, and we should have a better error message than no spectra found, when the desired spectrum source file is not available.
2014-01-08 09:19 Brendan MacLean
Milestone2.2»2.5
2014-04-15 09:12 Kaipo Tamura
resolve as Fixed
Statusopen»resolved
Assigned Tokaipot@u.washington.edu»Chaochao
2017-10-18 08:35 Brendan MacLean
close
Statusresolved»closed
Assigned ToChaochao»Guest