Due to Agilent QqQ data baseline anomalies, an investigator working with these instruments has requested the ability to set the chromatogram graph baseline (or Min intensity) value:

https://skyline.gs.washington.edu/labkey/announcements/home/support/thread.view?entityId=6dc252f9-f52d-102f-97b8-5d0a05bc6c8e&_anchor=2496#row:2496

This should be relatively easy to support in the Chromatogram Graph Properties form (right-click > Properties in chromatogram plot).

Had this assigned to a former intern. Maybe you can take it a little later. Not yet your first priority.

This is the issue you were just expressing interest in.

This has been implemented.