| Title | | » | Add more support for chromatogram types in Bruker data |
| Assigned To | | » | Brian Pratt |
| Type | | » | Todo |
| Area | | » | Skyline |
| Priority | | » | 3 |
per Nov 12 2025 email on the ProteoWizard support board:
Dear ProteoWizard Support Team,
We are facing issues with conversion of Bruker raw data files (see picture below) to .mzML format using ProteoWIzard. Specifically, we noticed that there is no UV/DAD information in the converted mzML files. The measurements were conducted on a Bruker TIMS-TOF. Is this a common issue and do you have any suggestions for how we can convert the files into a readable format that stores MS and UV/DAD information?
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The information is there, in sqlite files, and Sven at Bruker has supplied some Python code to show how to get at it.