Problems with Prospector generated pep.xml files in the new 2.1 release Ruth Huttenhain  2013-11-27
Hi Brendan,

I am having some troubles with generating a spectral library from a Prospector generated pep.xml file in Skyline release 2.1, which I do not have using the 1.4 release. The error that I get says: ERROR: QE20131113-01_ITMSms2cid.pep.xml(line 1082390): Unknown exeption
I checked the line in the pep.xml file and it is actually the second last line saying: </msms_run_summary>
Please let me know if you have any idea what the problem might be.

Thanks a lot,

Ruth Huttenhain responded:  2013-11-27
I attach the compressed file
Kaipo responded:  2013-12-06
Hi Ruth,

Can you point me to a place where I can download the associated spectrum file?