External tool accessing multiple reports and not recognizing path to R | lilian heil | 2024-08-19 11:45 | |||||||||||||||||||||||||||||||||||
Hi! I am trying to write a tool that plots cal curves. So I need a report that has information on intensity for each replicate, as well as cal curve information (slope, LOD, LOQ, etc). I can write this all to one report, but it takes forever. If I remember correctly, it recalculates LOD and LOQ for every line in the table. I really only need that once per peptide, but I may have 12+ rows per peptide. Normally I just write two reports: one that has info on cal curve (one row per peptide), and one that has a row for each point on the cal curve. Is there a way to get an external tool to use these two reports? Or would you suggest another way to do this? It can take a very long time to write the report as is. Another small thing, I am unable to get Skyline to recognize the path to R.exe. The only reason I can think it's doing this is because there is a space in the path (C:\Program Files\R\R-4.3.1\bin\x64\R.exe). When I run in command line I normally have to add quotation marks around the path name, but Skyline still can't find path when I manually specify pathname, and the macro also has space in name and it gives the same error. Is there a way around this besides moving R installation directory? Thanks, Lilian |
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