Issue during TSQ altis file import bkr  2023-05-16 06:36
 

Hi Skyline team,

I am trying to import TSQ altis file and suddenly I started getting this error

At 15:30:
Failed importing results file 'F:\GluC_02.raw'.
[ScanInfoImpl::initialize(corrupt scan filter for scan 1)] Specified argument was out of the range of valid values.
Parameter name: scan
pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'F:\GluC_02.raw'.
[ScanInfoImpl::initialize(corrupt scan filter for scan 1)] Specified argument was out of the range of valid values.
Parameter name: scan ---> System.Exception: [ScanInfoImpl::initialize(corrupt scan filter for scan 1)] Specified argument was out of the range of valid values.
Parameter name: scan
at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config)
at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints, Int32 preferOnlyMsLevel, Boolean combineIonMobilitySpectra, Boolean trimNativeId) in C:\proj\skyline_22_2\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 197
at pwiz.Skyline.Model.Results.MsDataFilePath.OpenMsDataFile(Boolean simAsSpectra, Boolean preferOnlyMs1, Boolean centroidMs1, Boolean centroidMs2, Boolean ignoreZeroIntensityPoints) in C:\proj\skyline_22_2\pwiz_tools\Skyline\Model\Results\MsDataFilePath.cs:line 291
at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in C:\proj\skyline_22_2\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 199
--- End of inner exception stack trace ---

 
 
Brian Pratt responded:  2023-05-17 07:48

One possibility is that it's a corrupt file. Are you able to view it in any other software?

Thanks for using the Skyline support board,

Brian Pratt