spectral library _ Error sudhir pr  2022-09-20
 

Hi All,

I tried to build spectral library using MaxQuant msms.txt file and modifications.xml files. But I got the following error message. Would you please help to solve the problem? Please suggest next steps. Thank you.

More info (Error message):

System.IO.IOException: Error occurred running process.

Command-line: C:\Users\reddys49\AppData\Local\Apps\2.0\580TP24P.9OP\H3L3QW2E.RPJ\skyl..tion_e4141a2a22107248_0016.0002_1c0fe1ba9c975222\BlibBuild -s -A -H -o -i Urine_QEHF -S "C:\Users\reddys49\AppData\Local\Temp\tmp2031.tmp" "C:\Users\reddys49\OneDrive - Bristol Myers Squibb\Desktop\SPR_BMS\Sudhir Reddy\Database\From_XQ-AD_MQtxtfiles_UrineQEdata\txt\txt\Urine_QEHF.redundant.blib"
Working directory: C:\Users\reddys49\OneDrive - Bristol Myers Squibb\Desktop\SPR_BMS\Sudhir Reddy\Database\From_XQ-AD_MQtxtfiles_UrineQEdata\txt\txt
at pwiz.Common.SystemUtil.ProcessRunner.Run(ProcessStartInfo psi, String stdin, IProgressMonitor progress, IProgressStatus& status, TextWriter writer, ProcessPriorityClass priorityClass) in C:\proj\skyline_22_2\pwiz_tools\Shared\Common\SystemUtil\ProcessRunner.cs:line 161
at pwiz.BiblioSpec.BlibBuild.BuildLibrary(LibraryBuildAction libraryBuildAction, IProgressMonitor progressMonitor, IProgressStatus& status, String& commandArgs, String& messageLog, String[]& ambiguous) in C:\proj\skyline_22_2\pwiz_tools\Shared\BiblioSpec\BlibBuild.cs:line 412
at pwiz.Skyline.Model.Lib.BiblioSpecLiteBuilder.BuildLibrary(IProgressMonitor progress) in C:\proj\skyline_22_2\pwiz_tools\Skyline\Model\Lib\BiblioSpecLiteBuilder.cs:line 161

 
 
Nick Shulman responded:  2022-09-20
Can you send us your files? That might include "msms.txt", "modifications.xml", "mqpar.xml", "modifications.local.xml", as well as your .raw, .mzML, .mzXML or maybe .mgf files.

Files which are less than 50MB can be attached to this support request.
It might be easiest if you put everything in a big .zip file and uploaded it here:
https://skyline.ms/files.url

-- Nick
 
sudhir pr responded:  2022-09-20
Hi Nick,
I can't send raw files due to some regulation policies. In addition, I don't have modifications.local.xml. Please provide me your email, I can invite you on Teams. Thank you!
Best
Sudhir Reddy
 
Nick Shulman responded:  2022-09-20
I will send you an email.
-- Nick
 
sudhir pr responded:  2022-09-21
Thank you!