Dear Skyline Team,
We are in the process of analyzing about 2 thousand peptides, and we exported the picture by just Right Click on the image and then choose "Save Image As...". and when we were checking the images, we have 2000+ of them, today and we found that the image we saved is an ".emf" file and THE FIGURE LEGEND WAS NOT ON EACH PICTURE. This is surprising. When we do just copy and paste the Metafile on each picture, the figure legend is preserved into the picture.
So rather than redo everything, I want to ask about is there a way to export just Figure Legends for all the peptides and fragmented ions from a skyline file in a batch process way? And how does skyline decide which color is assigned to which ion? We have a lot of pictures like these, and we already know which peptide sequence each of such picture is representing, but we do not know the transitions and ions without keeping the figure legend. Please help. We have 2k + pictures and sequences like the one attached.