Hi Skyline team,
I would like to perform some CE (and try some DP) optimizations on phosphopeptides on a Sciex7500.
For the Altis there was a single option. However for Sciex I see multiple options:
For CE:
- SCIEX
- QTRAP 6500
- ABI 5500 Q trap PO4
For DP:
I'm a bit confused which equation to use in my case; a MS model that is not listed and investigating PO4 peptides. What are the different equations based on ? And which one would you recommend?
Also the CE values can change a lot depending on the equation (see attachment).
Greetings,
Erik