Issues to build spectral library using DIAumpire-MSFragger search result | weixiandeng | 2021-09-30 09:49 | |||||||||||||||||||||||||||||||||||||||||||||||||||
Hi Skyline team, I'm trying to use DIAumpire-MSFragger search result to build the spectral library while reported the error showing below. I cannot use Skyline built-in DIAumpire-MSAmanda workflow either, cuz it reported another error I also pasted below. Could you please help me troubleshoot it, let me know if you need any more information from my end. Best, Weixian Error reported from building spectral library: --------------------------- Skyline-daily --------------------------- ERROR: No spectra were found for the new library. Command-line: C:\Users\Weixi\AppData\Local\Apps\2.0\2DGDTT6K.HWY\AXQVBVWC.NHK\skyl..tion_e4141a2a22107248_0015.0001_a9966f7f082f651e\BlibBuild -s -A -H -o -c 0.99 -i Tri_injection_GPF_DIA -S "C:\Users\Weixi\AppData\Local\Temp\tmpE51A.tmp" "E:\Research\2021-09-24-GPF-DIA\GPF-DIA\Tri_injection_GPF_DIA.redundant.blib" Working directory: E:\Research\2021-09-24-GPF-DIA\GPF-DIA --------------------------- OK More Info --------------------------- System.IO.IOException: ERROR: No spectra were found for the new library. Command-line: C:\Users\Weixi\AppData\Local\Apps\2.0\2DGDTT6K.HWY\AXQVBVWC.NHK\skyl..tion_e4141a2a22107248_0015.0001_a9966f7f082f651e\BlibBuild -s -A -H -o -c 0.99 -i Tri_injection_GPF_DIA -S "C:\Users\Weixi\AppData\Local\Temp\tmpE51A.tmp" "E:\Research\2021-09-24-GPF-DIA\GPF-DIA\Tri_injection_GPF_DIA.redundant.blib" Working directory: E:\Research\2021-09-24-GPF-DIA\GPF-DIA at pwiz.Common.SystemUtil.ProcessRunner.Run(ProcessStartInfo psi, String stdin, IProgressMonitor progress, IProgressStatus& status, TextWriter writer, ProcessPriorityClass priorityClass) in C:\proj\pwiz_x64\pwiz_tools\Shared\Common\SystemUtil\ProcessRunner.cs:line 65 at pwiz.BiblioSpec.BlibBuild.BuildLibrary(LibraryBuildAction libraryBuildAction, IProgressMonitor progressMonitor, IProgressStatus& status, String& commandArgs, String& messageLog, String[]& ambiguous) in C:\proj\pwiz_x64\pwiz_tools\Shared\BiblioSpec\BlibBuild.cs:line 201 at pwiz.Skyline.Model.Lib.BiblioSpecLiteBuilder.BuildLibrary(IProgressMonitor progress) in C:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Lib\BiblioSpecLiteBuilder.cs:line 157 --------------------------- Error reported from direct DIA search in Skyline --------------------------- Skyline-daily --------------------------- Error --------------------------- OK More Info --------------------------- System.IO.FileNotFoundException: Could not find file 'C:\Users\Weixi\AppData\Local\Temp\4ml3jgnk.uoq.mz5'. File name: 'C:\Users\Weixi\AppData\Local\Temp\4ml3jgnk.uoq.mz5' at System.IO.__Error.WinIOError(Int32 errorCode, String maybeFullPath) at System.IO.File.InternalMove(String sourceFileName, String destFileName, Boolean checkHost) at pwiz.Skyline.Model.DiaUmpireDdaConverter.Run(IProgressMonitor progressMonitor, IProgressStatus status) in C:\proj\pwiz_x64\pwiz_tools\Skyline\Model\DiaUmpireDdaConverter.cs:line 156 --------------------------- |
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