"Error generating quanpedia databank" when exporting method andy shapanis  2021-06-21
 
Hi Skyline team,

Love the software.

I am having issues exporting a method (Xevo-TQXS), which appears to only persist when using SSRC to calculate retention time windows.

I can successfully export methods in every other capacity (that i have tried) but it seems as soon as I use the SSRCalc to get predicted retention times, I get an error exporting.

I can export as transition list and then manually put them into a method but this will be time consuming as i plan to have a lot of peptides, this is just a tester subset i am using at the moment.

below is the printed error, hopefully you can help?

many thanks,

Andy

Error:
---------------------------
Skyline
---------------------------
An error occurred attempting to export.
Error generating Quanpedia databank

Command-line: Method\Waters\BuildWatersMethod -w 5.6893 -s -m "C:\Users\Administrator\Downloads\MSI+v1.1.0\MSI v1.1.0\Master Files\Template_XevoTQ_XS.exp"
Working directory: C:\Users\Administrator\Documents\Andy Shapanis\Pan cancer\Skyline\Skyline outputs\Transition lists
Standard input:
C:\Users\Administrator\Documents\Andy Shapanis\Pan cancer\Skyline\Skyline outputs\Transition lists\~SK11BA.tmp
C:\Users\Administrator\Documents\Andy Shapanis\Pan cancer\Skyline\Skyline outputs\Transition lists\dsfasad.exp
protein.name,peptide.seq,precursor.mz,precursor.retT,product.m_z,collision_energy,cone_voltage,peptide_unmod.seq,ion_name,library_rank
RePLiCal,VTASGDDSPSGK.2,560.759474,-1.8,1021.443259,20,35,VTASGDDSPSGK,y11,-1
RePLiCal,VTASGDDSPSGK.2,560.759474,-1.8,920.39558,20,35,VTASGDDSPSGK,y10,-1
RePLiCal,VTASGDDSPSGK.2,560.759474,-1.8,849.358467,20,35,VTASGDDSPSGK,y9,-1
RePLiCal,VTASGDDSPSGK.2,560.759474,-1.8,762.326438,20,35,VTASGDDSPSGK,y8,-1
RePLiCal,SSYVGDEASSK.2,565.254025,0.59,955.436717,20,35,SSYVGDEASSK,y9,-1
RePLiCal,SSYVGDEASSK.2,565.254025,0.59,792.373388,20,35,SSYVGDEASSK,y8,-1
RePLiCal,SSYVGDEASSK.2,565.254025,0.59,693.304974,20,35,SSYVGDEASSK,y7,-1
RePLiCal,SSYVGDEASSK.2,565.254025,0.59,521.256568,20,35,SSYVGDEASSK,y5,-1
RePLiCal,IVPEPQPK.2,454.26601,2.07,695.372266,16,35,IVPEPQPK,y6,-1
RePLiCal,IVPEPQPK.2,454.26601,2.07,598.319502,16,35,IVPEPQPK,y5,-1
RePLiCal,IVPEPQPK.2,454.26601,2.07,469.276909,16,35,IVPEPQPK,y4,-1
RePLiCal,GAIETEPAVK.2,507.776939,3.63,886.488024,18,35,GAIETEPAVK,y8,-1
RePLiCal,GAIETEPAVK.2,507.776939,3.63,773.40396,18,35,GAIETEPAVK,y7,-1
RePLiCal,GAIETEPAVK.2,507.776939,3.63,644.361367,18,35,GAIETEPAVK,y6,-1
RePLiCal,GAIETEPAVK.2,507.776939,3.63,414.271095,18,35,GAIETEPAVK,y4,-1
RePLiCal,VGYDLPGK.2,424.72926,4.34,749.382831,15,35,VGYDLPGK,y7,-1
RePLiCal,VGYDLPGK.2,424.72926,4.34,692.361367,15,35,VGYDLPGK,y6,-1
RePLiCal,VGYDLPGK.2,424.72926,4.34,529.298038,15,35,VGYDLPGK,y5,-1
RePLiCal,VGYDLPGK.2,424.72926,4.34,548.271489,15,35,VGYDLPGK,b5,-1
RePLiCal,SAGGAFGPELSK.2,560.785295,6.9,962.494172,20,35,SAGGAFGPELSK,y10,-1
RePLiCal,SAGGAFGPELSK.2,560.785295,6.9,777.414131,20,35,SAGGAFGPELSK,y7,-1
RePLiCal,SAGGAFGPELSK.2,560.785295,6.9,630.345717,20,35,SAGGAFGPELSK,y6,-1
RePLiCal,SAGGAFGPELSK.2,560.785295,6.9,573.324253,20,35,SAGGAFGPELSK,y5,-1
RePLiCal,TASEFESAIDAQK.2,698.833171,7.68,1224.574273,25,35,TASEFESAIDAQK,y11,-1
RePLiCal,TASEFESAIDAQK.2,698.833171,7.68,1008.499651,25,35,TASEFESAIDAQK,y9,-1
RePLiCal,TASEFESAIDAQK.2,698.833171,7.68,861.431238,25,35,TASEFESAIDAQK,y8,-1
RePLiCal,TASEFESAIDAQK.2,698.833171,7.68,732.388644,25,35,TASEFESAIDAQK,y7,-1
RePLiCal,VGLFAGAGVGK.2,488.284734,8.4,876.493778,17,35,VGLFAGAGVGK,y10,-1
RePLiCal,VGLFAGAGVGK.2,488.284734,8.4,819.472314,17,35,VGLFAGAGVGK,y9,-1
RePLiCal,VGLFAGAGVGK.2,488.284734,8.4,706.38825,17,35,VGLFAGAGVGK,y8,-1
RePLiCal,VGLFAGAGVGK.2,488.284734,8.4,559.319837,17,35,VGLFAGAGVGK,y7,-1
RePLiCal,TQLIDVEIAK.2,565.326796,10.07,900.54006,20,35,TQLIDVEIAK,y8,-1
RePLiCal,TQLIDVEIAK.2,565.326796,10.07,787.455996,20,35,TQLIDVEIAK,y7,-1
RePLiCal,TQLIDVEIAK.2,565.326796,10.07,674.371932,20,35,TQLIDVEIAK,y6,-1
RePLiCal,TQLIDVEIAK.2,565.326796,10.07,460.276575,20,35,TQLIDVEIAK,y4,-1
RePLiCal,LTIAPALLK.2,470.315503,9.72,826.539666,16,35,LTIAPALLK,y8,-1
RePLiCal,LTIAPALLK.2,470.315503,9.72,725.491987,16,35,LTIAPALLK,y7,-1
RePLiCal,LTIAPALLK.2,470.315503,9.72,612.407923,16,35,LTIAPALLK,y6,-1
RePLiCal,LTIAPALLK.2,470.315503,9.72,541.370809,16,35,LTIAPALLK,y5,-1
RePLiCal,ILTDIVGPEAPLVK.2,732.937242,13.59,909.540394,26,35,ILTDIVGPEAPLVK,y9,-1
RePLiCal,ILTDIVGPEAPLVK.2,732.937242,13.59,810.47198,26,35,ILTDIVGPEAPLVK,y8,-1
RePLiCal,ILTDIVGPEAPLVK.2,732.937242,13.59,753.450516,26,35,ILTDIVGPEAPLVK,y7,-1
RePLiCal,ILTDIVGPEAPLVK.2,732.937242,13.59,655.402504,26,35,ILTDIVGPEAPLVK,b6,-1
RePLiCal,VVSLPDFFTFSK.2,693.868828,15.02,1188.593552,25,35,VVSLPDFFTFSK,y10,-1
RePLiCal,VVSLPDFFTFSK.2,693.868828,15.02,988.477459,25,35,VVSLPDFFTFSK,y8,-1
RePLiCal,VVSLPDFFTFSK.2,693.868828,15.02,776.397753,25,35,VVSLPDFFTFSK,y6,-1
RePLiCal,VVSLPDFFTFSK.2,693.868828,15.02,482.260925,25,35,VVSLPDFFTFSK,y4,-1
sp|P06731|CEAM5_HUMAN,QIIGYVIGTQQATPGPAYSGR.2,1089.07111,12.01,905.447556,39,35,QIIGYVIGTQQATPGPAYSGR,y9,3
sp|P06731|CEAM5_HUMAN,QIIGYVIGTQQATPGPAYSGR.2,1089.07111,12.01,804.399878,39,35,QIIGYVIGTQQATPGPAYSGR,y8,1
sp|P06731|CEAM5_HUMAN,QIIGYVIGTQQATPGPAYSGR.2,1089.07111,12.01,1373.742341,39,35,QIIGYVIGTQQATPGPAYSGR,b13,2
sp|P06731|CEAM5_HUMAN,SDLVNEEATGQFR.2,733.349519,8.58,1051.480313,26,35,SDLVNEEATGQFR,y9,1
sp|P06731|CEAM5_HUMAN,SDLVNEEATGQFR.2,733.349519,8.58,608.315085,26,35,SDLVNEEATGQFR,y5,3
sp|P06731|CEAM5_HUMAN,SDLVNEEATGQFR.2,733.349519,8.58,507.267407,26,35,SDLVNEEATGQFR,y4,2
sp|P06731|CEAM5_HUMAN,NDVGPYEC[+57.021464]GIQNK.2,747.338097,4.95,1165.530634,27,35,NDVGPYECGIQNK,y10,1
sp|P06731|CEAM5_HUMAN,NDVGPYEC[+57.021464]GIQNK.2,747.338097,4.95,1108.509171,27,35,NDVGPYECGIQNK,y9,2
sp|P06731|CEAM5_HUMAN,NDVGPYEC[+57.021464]GIQNK.2,747.338097,4.95,329.14556,27,35,NDVGPYECGIQNK,b3,3
sp|P06731|CEAM5_HUMAN,INGIPQQHTQVLFIAK.2,904.014878,12.02,1409.78996,32,35,INGIPQQHTQVLFIAK,y12,1
sp|P06731|CEAM5_HUMAN,INGIPQQHTQVLFIAK.2,904.014878,12.02,1056.620041,32,35,INGIPQQHTQVLFIAK,y9,2
sp|P06731|CEAM5_HUMAN,INGIPQQHTQVLFIAK.2,904.014878,12.02,1329.72736,32,35,INGIPQQHTQVLFIAK,b12,3

---------------------------
OK More Info
---------------------------
System.IO.IOException: Error generating Quanpedia databank

Command-line: Method\Waters\BuildWatersMethod -w 5.6893 -s -m "C:\Users\Administrator\Downloads\MSI+v1.1.0\MSI v1.1.0\Master Files\Template_XevoTQ_XS.exp"
Working directory: C:\Users\Administrator\Documents\Andy Shapanis\Pan cancer\Skyline\Skyline outputs\Transition lists
Standard input:
C:\Users\Administrator\Documents\Andy Shapanis\Pan cancer\Skyline\Skyline outputs\Transition lists\~SK11BA.tmp
C:\Users\Administrator\Documents\Andy Shapanis\Pan cancer\Skyline\Skyline outputs\Transition lists\dsfasad.exp
protein.name,peptide.seq,precursor.mz,precursor.retT,product.m_z,collision_energy,cone_voltage,peptide_unmod.seq,ion_name,library_rank
RePLiCal,VTASGDDSPSGK.2,560.759474,-1.8,1021.443259,20,35,VTASGDDSPSGK,y11,-1
RePLiCal,VTASGDDSPSGK.2,560.759474,-1.8,920.39558,20,35,VTASGDDSPSGK,y10,-1
RePLiCal,VTASGDDSPSGK.2,560.759474,-1.8,849.358467,20,35,VTASGDDSPSGK,y9,-1
RePLiCal,VTASGDDSPSGK.2,560.759474,-1.8,762.326438,20,35,VTASGDDSPSGK,y8,-1
RePLiCal,SSYVGDEASSK.2,565.254025,0.59,955.436717,20,35,SSYVGDEASSK,y9,-1
RePLiCal,SSYVGDEASSK.2,565.254025,0.59,792.373388,20,35,SSYVGDEASSK,y8,-1
RePLiCal,SSYVGDEASSK.2,565.254025,0.59,693.304974,20,35,SSYVGDEASSK,y7,-1
RePLiCal,SSYVGDEASSK.2,565.254025,0.59,521.256568,20,35,SSYVGDEASSK,y5,-1
RePLiCal,IVPEPQPK.2,454.26601,2.07,695.372266,16,35,IVPEPQPK,y6,-1
RePLiCal,IVPEPQPK.2,454.26601,2.07,598.319502,16,35,IVPEPQPK,y5,-1
RePLiCal,IVPEPQPK.2,454.26601,2.07,469.276909,16,35,IVPEPQPK,y4,-1
RePLiCal,GAIETEPAVK.2,507.776939,3.63,886.488024,18,35,GAIETEPAVK,y8,-1
RePLiCal,GAIETEPAVK.2,507.776939,3.63,773.40396,18,35,GAIETEPAVK,y7,-1
RePLiCal,GAIETEPAVK.2,507.776939,3.63,644.361367,18,35,GAIETEPAVK,y6,-1
RePLiCal,GAIETEPAVK.2,507.776939,3.63,414.271095,18,35,GAIETEPAVK,y4,-1
RePLiCal,VGYDLPGK.2,424.72926,4.34,749.382831,15,35,VGYDLPGK,y7,-1
RePLiCal,VGYDLPGK.2,424.72926,4.34,692.361367,15,35,VGYDLPGK,y6,-1
RePLiCal,VGYDLPGK.2,424.72926,4.34,529.298038,15,35,VGYDLPGK,y5,-1
RePLiCal,VGYDLPGK.2,424.72926,4.34,548.271489,15,35,VGYDLPGK,b5,-1
RePLiCal,SAGGAFGPELSK.2,560.785295,6.9,962.494172,20,35,SAGGAFGPELSK,y10,-1
RePLiCal,SAGGAFGPELSK.2,560.785295,6.9,777.414131,20,35,SAGGAFGPELSK,y7,-1
RePLiCal,SAGGAFGPELSK.2,560.785295,6.9,630.345717,20,35,SAGGAFGPELSK,y6,-1
RePLiCal,SAGGAFGPELSK.2,560.785295,6.9,573.324253,20,35,SAGGAFGPELSK,y5,-1
RePLiCal,TASEFESAIDAQK.2,698.833171,7.68,1224.574273,25,35,TASEFESAIDAQK,y11,-1
RePLiCal,TASEFESAIDAQK.2,698.833171,7.68,1008.499651,25,35,TASEFESAIDAQK,y9,-1
RePLiCal,TASEFESAIDAQK.2,698.833171,7.68,861.431238,25,35,TASEFESAIDAQK,y8,-1
RePLiCal,TASEFESAIDAQK.2,698.833171,7.68,732.388644,25,35,TASEFESAIDAQK,y7,-1
RePLiCal,VGLFAGAGVGK.2,488.284734,8.4,876.493778,17,35,VGLFAGAGVGK,y10,-1
RePLiCal,VGLFAGAGVGK.2,488.284734,8.4,819.472314,17,35,VGLFAGAGVGK,y9,-1
RePLiCal,VGLFAGAGVGK.2,488.284734,8.4,706.38825,17,35,VGLFAGAGVGK,y8,-1
RePLiCal,VGLFAGAGVGK.2,488.284734,8.4,559.319837,17,35,VGLFAGAGVGK,y7,-1
RePLiCal,TQLIDVEIAK.2,565.326796,10.07,900.54006,20,35,TQLIDVEIAK,y8,-1
RePLiCal,TQLIDVEIAK.2,565.326796,10.07,787.455996,20,35,TQLIDVEIAK,y7,-1
RePLiCal,TQLIDVEIAK.2,565.326796,10.07,674.371932,20,35,TQLIDVEIAK,y6,-1
RePLiCal,TQLIDVEIAK.2,565.326796,10.07,460.276575,20,35,TQLIDVEIAK,y4,-1
RePLiCal,LTIAPALLK.2,470.315503,9.72,826.539666,16,35,LTIAPALLK,y8,-1
RePLiCal,LTIAPALLK.2,470.315503,9.72,725.491987,16,35,LTIAPALLK,y7,-1
RePLiCal,LTIAPALLK.2,470.315503,9.72,612.407923,16,35,LTIAPALLK,y6,-1
RePLiCal,LTIAPALLK.2,470.315503,9.72,541.370809,16,35,LTIAPALLK,y5,-1
RePLiCal,ILTDIVGPEAPLVK.2,732.937242,13.59,909.540394,26,35,ILTDIVGPEAPLVK,y9,-1
RePLiCal,ILTDIVGPEAPLVK.2,732.937242,13.59,810.47198,26,35,ILTDIVGPEAPLVK,y8,-1
RePLiCal,ILTDIVGPEAPLVK.2,732.937242,13.59,753.450516,26,35,ILTDIVGPEAPLVK,y7,-1
RePLiCal,ILTDIVGPEAPLVK.2,732.937242,13.59,655.402504,26,35,ILTDIVGPEAPLVK,b6,-1
RePLiCal,VVSLPDFFTFSK.2,693.868828,15.02,1188.593552,25,35,VVSLPDFFTFSK,y10,-1
RePLiCal,VVSLPDFFTFSK.2,693.868828,15.02,988.477459,25,35,VVSLPDFFTFSK,y8,-1
RePLiCal,VVSLPDFFTFSK.2,693.868828,15.02,776.397753,25,35,VVSLPDFFTFSK,y6,-1
RePLiCal,VVSLPDFFTFSK.2,693.868828,15.02,482.260925,25,35,VVSLPDFFTFSK,y4,-1
sp|P06731|CEAM5_HUMAN,QIIGYVIGTQQATPGPAYSGR.2,1089.07111,12.01,905.447556,39,35,QIIGYVIGTQQATPGPAYSGR,y9,3
sp|P06731|CEAM5_HUMAN,QIIGYVIGTQQATPGPAYSGR.2,1089.07111,12.01,804.399878,39,35,QIIGYVIGTQQATPGPAYSGR,y8,1
sp|P06731|CEAM5_HUMAN,QIIGYVIGTQQATPGPAYSGR.2,1089.07111,12.01,1373.742341,39,35,QIIGYVIGTQQATPGPAYSGR,b13,2
sp|P06731|CEAM5_HUMAN,SDLVNEEATGQFR.2,733.349519,8.58,1051.480313,26,35,SDLVNEEATGQFR,y9,1
sp|P06731|CEAM5_HUMAN,SDLVNEEATGQFR.2,733.349519,8.58,608.315085,26,35,SDLVNEEATGQFR,y5,3
sp|P06731|CEAM5_HUMAN,SDLVNEEATGQFR.2,733.349519,8.58,507.267407,26,35,SDLVNEEATGQFR,y4,2
sp|P06731|CEAM5_HUMAN,NDVGPYEC[+57.021464]GIQNK.2,747.338097,4.95,1165.530634,27,35,NDVGPYECGIQNK,y10,1
sp|P06731|CEAM5_HUMAN,NDVGPYEC[+57.021464]GIQNK.2,747.338097,4.95,1108.509171,27,35,NDVGPYECGIQNK,y9,2
sp|P06731|CEAM5_HUMAN,NDVGPYEC[+57.021464]GIQNK.2,747.338097,4.95,329.14556,27,35,NDVGPYECGIQNK,b3,3
sp|P06731|CEAM5_HUMAN,INGIPQQHTQVLFIAK.2,904.014878,12.02,1409.78996,32,35,INGIPQQHTQVLFIAK,y12,1
sp|P06731|CEAM5_HUMAN,INGIPQQHTQVLFIAK.2,904.014878,12.02,1056.620041,32,35,INGIPQQHTQVLFIAK,y9,2
sp|P06731|CEAM5_HUMAN,INGIPQQHTQVLFIAK.2,904.014878,12.02,1329.72736,32,35,INGIPQQHTQVLFIAK,b12,3
 ---> System.IO.IOException: Error generating Quanpedia databank

Command-line: Method\Waters\BuildWatersMethod -w 5.6893 -s -m "C:\Users\Administrator\Downloads\MSI+v1.1.0\MSI v1.1.0\Master Files\Template_XevoTQ_XS.exp"
Working directory: C:\Users\Administrator\Documents\Andy Shapanis\Pan cancer\Skyline\Skyline outputs\Transition lists
Standard input:
C:\Users\Administrator\Documents\Andy Shapanis\Pan cancer\Skyline\Skyline outputs\Transition lists\~SK11BA.tmp
C:\Users\Administrator\Documents\Andy Shapanis\Pan cancer\Skyline\Skyline outputs\Transition lists\dsfasad.exp
protein.name,peptide.seq,precursor.mz,precursor.retT,product.m_z,collision_energy,cone_voltage,peptide_unmod.seq,ion_name,library_rank
RePLiCal,VTASGDDSPSGK.2,560.759474,-1.8,1021.443259,20,35,VTASGDDSPSGK,y11,-1
RePLiCal,VTASGDDSPSGK.2,560.759474,-1.8,920.39558,20,35,VTASGDDSPSGK,y10,-1
RePLiCal,VTASGDDSPSGK.2,560.759474,-1.8,849.358467,20,35,VTASGDDSPSGK,y9,-1
RePLiCal,VTASGDDSPSGK.2,560.759474,-1.8,762.326438,20,35,VTASGDDSPSGK,y8,-1
RePLiCal,SSYVGDEASSK.2,565.254025,0.59,955.436717,20,35,SSYVGDEASSK,y9,-1
RePLiCal,SSYVGDEASSK.2,565.254025,0.59,792.373388,20,35,SSYVGDEASSK,y8,-1
RePLiCal,SSYVGDEASSK.2,565.254025,0.59,693.304974,20,35,SSYVGDEASSK,y7,-1
RePLiCal,SSYVGDEASSK.2,565.254025,0.59,521.256568,20,35,SSYVGDEASSK,y5,-1
RePLiCal,IVPEPQPK.2,454.26601,2.07,695.372266,16,35,IVPEPQPK,y6,-1
RePLiCal,IVPEPQPK.2,454.26601,2.07,598.319502,16,35,IVPEPQPK,y5,-1
RePLiCal,IVPEPQPK.2,454.26601,2.07,469.276909,16,35,IVPEPQPK,y4,-1
RePLiCal,GAIETEPAVK.2,507.776939,3.63,886.488024,18,35,GAIETEPAVK,y8,-1
RePLiCal,GAIETEPAVK.2,507.776939,3.63,773.40396,18,35,GAIETEPAVK,y7,-1
RePLiCal,GAIETEPAVK.2,507.776939,3.63,644.361367,18,35,GAIETEPAVK,y6,-1
RePLiCal,GAIETEPAVK.2,507.776939,3.63,414.271095,18,35,GAIETEPAVK,y4,-1
RePLiCal,VGYDLPGK.2,424.72926,4.34,749.382831,15,35,VGYDLPGK,y7,-1
RePLiCal,VGYDLPGK.2,424.72926,4.34,692.361367,15,35,VGYDLPGK,y6,-1
RePLiCal,VGYDLPGK.2,424.72926,4.34,529.298038,15,35,VGYDLPGK,y5,-1
RePLiCal,VGYDLPGK.2,424.72926,4.34,548.271489,15,35,VGYDLPGK,b5,-1
RePLiCal,SAGGAFGPELSK.2,560.785295,6.9,962.494172,20,35,SAGGAFGPELSK,y10,-1
RePLiCal,SAGGAFGPELSK.2,560.785295,6.9,777.414131,20,35,SAGGAFGPELSK,y7,-1
RePLiCal,SAGGAFGPELSK.2,560.785295,6.9,630.345717,20,35,SAGGAFGPELSK,y6,-1
RePLiCal,SAGGAFGPELSK.2,560.785295,6.9,573.324253,20,35,SAGGAFGPELSK,y5,-1
RePLiCal,TASEFESAIDAQK.2,698.833171,7.68,1224.574273,25,35,TASEFESAIDAQK,y11,-1
RePLiCal,TASEFESAIDAQK.2,698.833171,7.68,1008.499651,25,35,TASEFESAIDAQK,y9,-1
RePLiCal,TASEFESAIDAQK.2,698.833171,7.68,861.431238,25,35,TASEFESAIDAQK,y8,-1
RePLiCal,TASEFESAIDAQK.2,698.833171,7.68,732.388644,25,35,TASEFESAIDAQK,y7,-1
RePLiCal,VGLFAGAGVGK.2,488.284734,8.4,876.493778,17,35,VGLFAGAGVGK,y10,-1
RePLiCal,VGLFAGAGVGK.2,488.284734,8.4,819.472314,17,35,VGLFAGAGVGK,y9,-1
RePLiCal,VGLFAGAGVGK.2,488.284734,8.4,706.38825,17,35,VGLFAGAGVGK,y8,-1
RePLiCal,VGLFAGAGVGK.2,488.284734,8.4,559.319837,17,35,VGLFAGAGVGK,y7,-1
RePLiCal,TQLIDVEIAK.2,565.326796,10.07,900.54006,20,35,TQLIDVEIAK,y8,-1
RePLiCal,TQLIDVEIAK.2,565.326796,10.07,787.455996,20,35,TQLIDVEIAK,y7,-1
RePLiCal,TQLIDVEIAK.2,565.326796,10.07,674.371932,20,35,TQLIDVEIAK,y6,-1
RePLiCal,TQLIDVEIAK.2,565.326796,10.07,460.276575,20,35,TQLIDVEIAK,y4,-1
RePLiCal,LTIAPALLK.2,470.315503,9.72,826.539666,16,35,LTIAPALLK,y8,-1
RePLiCal,LTIAPALLK.2,470.315503,9.72,725.491987,16,35,LTIAPALLK,y7,-1
RePLiCal,LTIAPALLK.2,470.315503,9.72,612.407923,16,35,LTIAPALLK,y6,-1
RePLiCal,LTIAPALLK.2,470.315503,9.72,541.370809,16,35,LTIAPALLK,y5,-1
RePLiCal,ILTDIVGPEAPLVK.2,732.937242,13.59,909.540394,26,35,ILTDIVGPEAPLVK,y9,-1
RePLiCal,ILTDIVGPEAPLVK.2,732.937242,13.59,810.47198,26,35,ILTDIVGPEAPLVK,y8,-1
RePLiCal,ILTDIVGPEAPLVK.2,732.937242,13.59,753.450516,26,35,ILTDIVGPEAPLVK,y7,-1
RePLiCal,ILTDIVGPEAPLVK.2,732.937242,13.59,655.402504,26,35,ILTDIVGPEAPLVK,b6,-1
RePLiCal,VVSLPDFFTFSK.2,693.868828,15.02,1188.593552,25,35,VVSLPDFFTFSK,y10,-1
RePLiCal,VVSLPDFFTFSK.2,693.868828,15.02,988.477459,25,35,VVSLPDFFTFSK,y8,-1
RePLiCal,VVSLPDFFTFSK.2,693.868828,15.02,776.397753,25,35,VVSLPDFFTFSK,y6,-1
RePLiCal,VVSLPDFFTFSK.2,693.868828,15.02,482.260925,25,35,VVSLPDFFTFSK,y4,-1
sp|P06731|CEAM5_HUMAN,QIIGYVIGTQQATPGPAYSGR.2,1089.07111,12.01,905.447556,39,35,QIIGYVIGTQQATPGPAYSGR,y9,3
sp|P06731|CEAM5_HUMAN,QIIGYVIGTQQATPGPAYSGR.2,1089.07111,12.01,804.399878,39,35,QIIGYVIGTQQATPGPAYSGR,y8,1
sp|P06731|CEAM5_HUMAN,QIIGYVIGTQQATPGPAYSGR.2,1089.07111,12.01,1373.742341,39,35,QIIGYVIGTQQATPGPAYSGR,b13,2
sp|P06731|CEAM5_HUMAN,SDLVNEEATGQFR.2,733.349519,8.58,1051.480313,26,35,SDLVNEEATGQFR,y9,1
sp|P06731|CEAM5_HUMAN,SDLVNEEATGQFR.2,733.349519,8.58,608.315085,26,35,SDLVNEEATGQFR,y5,3
sp|P06731|CEAM5_HUMAN,SDLVNEEATGQFR.2,733.349519,8.58,507.267407,26,35,SDLVNEEATGQFR,y4,2
sp|P06731|CEAM5_HUMAN,NDVGPYEC[+57.021464]GIQNK.2,747.338097,4.95,1165.530634,27,35,NDVGPYECGIQNK,y10,1
sp|P06731|CEAM5_HUMAN,NDVGPYEC[+57.021464]GIQNK.2,747.338097,4.95,1108.509171,27,35,NDVGPYECGIQNK,y9,2
sp|P06731|CEAM5_HUMAN,NDVGPYEC[+57.021464]GIQNK.2,747.338097,4.95,329.14556,27,35,NDVGPYECGIQNK,b3,3
sp|P06731|CEAM5_HUMAN,INGIPQQHTQVLFIAK.2,904.014878,12.02,1409.78996,32,35,INGIPQQHTQVLFIAK,y12,1
sp|P06731|CEAM5_HUMAN,INGIPQQHTQVLFIAK.2,904.014878,12.02,1056.620041,32,35,INGIPQQHTQVLFIAK,y9,2
sp|P06731|CEAM5_HUMAN,INGIPQQHTQVLFIAK.2,904.014878,12.02,1329.72736,32,35,INGIPQQHTQVLFIAK,b12,3

   at pwiz.Common.SystemUtil.ProcessRunner.Run(ProcessStartInfo psi, String stdin, IProgressMonitor progress, IProgressStatus& status, TextWriter writer) in C:\proj\skyline_20_1_x64\pwiz_tools\Shared\Common\SystemUtil\ProcessRunner.cs:line 62
   at pwiz.Common.SystemUtil.ProcessRunner.Run(ProcessStartInfo psi, String stdin, IProgressMonitor progress, IProgressStatus& status) in C:\proj\skyline_20_1_x64\pwiz_tools\Shared\Common\SystemUtil\ProcessRunner.cs:line 57
   at pwiz.Skyline.Util.Extensions.UtilProcess.RunProcess(ProcessStartInfo psi, String stdin, String messagePrefix, IProgressMonitor progress, IProgressStatus& status) in C:\proj\skyline_20_1_x64\pwiz_tools\Skyline\Util\Extensions\UtilProcess.cs:line 44
   at pwiz.Skyline.Model.MethodExporter.ExportMethod(String exeName, List`1 argv, String fileName, String templateName, Dictionary`2 dictTranLists, IProgressMonitor progressMonitor) in C:\proj\skyline_20_1_x64\pwiz_tools\Skyline\Model\Export.cs:line 3906
   at pwiz.Skyline.Model.WatersMethodExporter.ExportMethod(String fileName, String templateName, IProgressMonitor progressMonitor) in C:\proj\skyline_20_1_x64\pwiz_tools\Skyline\Model\Export.cs:line 3703
   at pwiz.Skyline.Model.ExportProperties.<>c__DisplayClass142_0.<ExportWatersMethod>b__0(IProgressMonitor m) in C:\proj\skyline_20_1_x64\pwiz_tools\Skyline\Model\Export.cs:line 771
   at pwiz.Skyline.Util.ProgressWaitBroker.PerformWork(ILongWaitBroker broker) in C:\proj\skyline_20_1_x64\pwiz_tools\Skyline\Util\UtilUI.cs:line 125
   at pwiz.Skyline.Controls.LongWaitDlg.RunWork(Action`1 performWork) in C:\proj\skyline_20_1_x64\pwiz_tools\Skyline\Controls\LongWaitDlg.cs:line 246
   --- End of inner exception stack trace ---
   at pwiz.Skyline.Util.Helpers.WrapAndThrowException(Exception x) in C:\proj\skyline_20_1_x64\pwiz_tools\Skyline\Util\Util.cs:line 1907
   at pwiz.Skyline.Controls.LongWaitDlg.PerformWork(Control parent, Int32 delayMillis, Action`1 performWork) in C:\proj\skyline_20_1_x64\pwiz_tools\Skyline\Controls\LongWaitDlg.cs:line 194
   at pwiz.Skyline.Controls.LongWaitDlg.PerformWork(Control parent, Int32 delayMillis, Action`1 performWork) in C:\proj\skyline_20_1_x64\pwiz_tools\Skyline\Controls\LongWaitDlg.cs:line 131
   at pwiz.Skyline.FileUI.ExportDlgProperties.PerformLongExport(Action`1 performExport) in C:\proj\skyline_20_1_x64\pwiz_tools\Skyline\FileUI\ExportMethodDlg.cs:line 2022
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