export a method with each transition CE optimized | tongzhang | 2020-03-12 13:47 |
In a project to optimize CEs for each transition, I created methods files with the option of optimizing collision energy selected. I ended up with 50 injections for 391 transitions on a TSQ. I followed a Skyline tutorial (link below) to upload the raw data, and would like to export a method with the best CEs for each transition. I enabled the "use optimization values when present" option, but can not get the optimized CE exported. One thing I noticed is that a schedule method was used in the tutorial, but I still want to export multiple methods because my peptides elute in a pretty narrow window. https://skyline.ms/_webdav/home/software/Skyline/@files/tutorials/OptimizeCE-1_4.pdf |
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