Hi Sonnet,
I see the problem. You are using a "Contains" filter for the raw data you want to import, and you are giving comma-separated values as input to the filter:
BMP_NEG_QC, BMP_Neg_QC, BMP_QC
Unfortunately, AutoQC Loader does not let you specify more than one string as input to the "Contains" filter so it is trying to find .raw directories that match the entire string above. You could try using the "Regular Expression" filter instead for this case. Something like this could work:
BMP_(|(N|n)(E|e)(G|g)_)QC
Thanks,
Vagisha