What kind of limit are you seeing on Accept Peptides? I did raise the textbox character limit to 10,000,000 on 21-May-2018 from 1,000,000. Could you possibly be using an older release (4.1 or earlier) or do you really need more than 10,000,000 characters of peptide sequence text? If so, yes, we really did not foresee this large a set of accepted candidates.
An intern in the lab is currently working on the Refine > Advanced form. I am having a hard time seeing how the minimum peak area filter fits into the current UI without being too obtrusive. If you have any ideas, please send me an image of what you have in mind. Otherwise, we will see what we can come up with. This might be possible in the 19.2 timeframe.
Thanks for your feedback.
Hi Brendan and Nick,
You are right - the limit I was referring to does no longer apply - I had experienced this before the upgrade and just tried it again - the accept peptides window seems without limit now (at least within the range I tested).
Still, it would be much more convenient and straightforward to have an option in the Refine - Advanced - Results window that allows filtering for minimal peak area (best or all samples) just like you have an option in that same window for filtering for dotp value (best or all samples). To be clear, the dotp filter option already exists in that menu - I was requesting to add one just like it for min. peptide area. Do you know what I mean?