Can skyline filter the DIA results by Protein FDR?

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Can skyline filter the DIA results by Protein FDR? rbbsky123456  2018-03-27 00:08
 
Hi, skyline team

   Some other software,like spectronaut can filter the DIA results by both peptide and protein FDR. I'm wondering if the skyline can do the same thing. Thanks.
 
 
Brendan MacLean responded:  2018-03-30 13:47
Yeah, OpenSWATH also. Not yet supported in Skyline, but we understand the concept and expect to implement it sometime this year.

Thanks for your interest.

--Brendan
 
rbbsky123456 responded:  2018-04-29 23:06
I'm looking forward to it very much. Thanks.