Can skyline filter the DIA results by Protein FDR?
rbbsky123456
2018-03-27 00:08
Hi, skyline team
Some other software,like spectronaut can filter the DIA results by both peptide and protein FDR. I'm wondering if the skyline can do the same thing. Thanks.
Brendan MacLean responded:
2018-03-30 13:47
Yeah, OpenSWATH also. Not yet supported in Skyline, but we understand the concept and expect to implement it sometime this year.