|small molecule transition list error||dspiciarich||2018-04-25|
I've generated a small molecule library that I'm able to manually inport into skyline (see attachment #1). Everything seems to load correctly and I can export the transition list. However if I close the window and then try to re-import the transition list into the gui, I get an error (see 2nd attachment).
When I try to use skylinerunner I get the following error:
Error: Failed importing the file c:\skyline_test\exported_sml_molecule_translist.csv. Failed to find peptide column., line 1.
I think my .sky file is expecting proteomic data and that I need to tell it that it should expect small molecule data. Is this correct? How do you recommend proceeding?
These are actually peptides but that I want skyline to treat the transitions as small molecules because the transitions wouldn't be predicted by the molecular weight or the molecular formula.