Skyline Daily Version: 23.1.1.520 & 24.1.1.254

Skyline Version: 24.1.0.199


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Skyline
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Error occurred running process.

Command-line: C:\Users\ChenS01\AppData\Local\Apps\2.0\JXE6A7NA.TXG\VT57QYD8.BAM\skyl..tion_9286511f3362df93_0018.0001_5aeb0e19d93199bf\BlibBuild -s -A -H -v warn -o -c 0.95 -i uEPS1_Unfiltered_Peptides -S "C:\Users\ChenS01\Desktop\uEPS1_Unfiltered_Peptides\uEPS1_Unfiltered_Peptides.redundant202409111102.stdin.txt" "C:\Users\ChenS01\Desktop\uEPS1_Unfiltered_Peptides\uEPS1_Unfiltered_Peptides.redundant.blib"
Working directory: C:\Users\ChenS01\Desktop\uEPS1_Unfiltered_Peptides
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OK More Info
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Skyline (64-bit) 24.1.0.199 (6a0775ef83)

System.IO.IOException: Error occurred running process.

Command-line: C:\Users\ChenS01\AppData\Local\Apps\2.0\JXE6A7NA.TXG\VT57QYD8.BAM\skyl..tion_9286511f3362df93_0018.0001_5aeb0e19d93199bf\BlibBuild -s -A -H -v warn -o -c 0.95 -i uEPS1_Unfiltered_Peptides -S "C:\Users\ChenS01\Desktop\uEPS1_Unfiltered_Peptides\uEPS1_Unfiltered_Peptides.redundant202409111102.stdin.txt" "C:\Users\ChenS01\Desktop\uEPS1_Unfiltered_Peptides\uEPS1_Unfiltered_Peptides.redundant.blib"
Working directory: C:\Users\ChenS01\Desktop\uEPS1_Unfiltered_Peptides ---> System.IO.IOException: Error occurred running process.

Command-line: C:\Users\ChenS01\AppData\Local\Apps\2.0\JXE6A7NA.TXG\VT57QYD8.BAM\skyl..tion_9286511f3362df93_0018.0001_5aeb0e19d93199bf\BlibBuild -s -A -H -v warn -o -c 0.95 -i uEPS1_Unfiltered_Peptides -S "C:\Users\ChenS01\Desktop\uEPS1_Unfiltered_Peptides\uEPS1_Unfiltered_Peptides.redundant202409111102.stdin.txt" "C:\Users\ChenS01\Desktop\uEPS1_Unfiltered_Peptides\uEPS1_Unfiltered_Peptides.redundant.blib"
Working directory: C:\Users\ChenS01\Desktop\uEPS1_Unfiltered_Peptides

Output:
Reading results from msms.txt.

 ---> System.IO.IOException: Error occurred running process.

Command-line: C:\Users\ChenS01\AppData\Local\Apps\2.0\JXE6A7NA.TXG\VT57QYD8.BAM\skyl..tion_9286511f3362df93_0018.0001_5aeb0e19d93199bf\BlibBuild -s -A -H -v warn -o -c 0.95 -i uEPS1_Unfiltered_Peptides -S "C:\Users\ChenS01\Desktop\uEPS1_Unfiltered_Peptides\uEPS1_Unfiltered_Peptides.redundant202409111102.stdin.txt" "C:\Users\ChenS01\Desktop\uEPS1_Unfiltered_Peptides\uEPS1_Unfiltered_Peptides.redundant.blib"
Working directory: C:\Users\ChenS01\Desktop\uEPS1_Unfiltered_Peptides
   at pwiz.Common.SystemUtil.ProcessRunner.Run(ProcessStartInfo psi, String stdin, IProgressMonitor progress, IProgressStatus& status, TextWriter writer, ProcessPriorityClass priorityClass, Boolean forceTempfilesCleanup, Func`3 outputAndExitCodeAreGoodFunc, Boolean updateProgressPercentage) in C:\proj\skyline_24_1\pwiz_tools\Shared\CommonUtil\SystemUtil\ProcessRunner.cs:line 203
   --- End of inner exception stack trace ---
   --- End of inner exception stack trace ---
   at pwiz.Common.SystemUtil.ProcessRunner.ThrowExceptionWithOutput(Exception exception, String output) in C:\proj\skyline_24_1\pwiz_tools\Shared\CommonUtil\SystemUtil\ProcessRunner.cs:line 263
   at pwiz.Common.SystemUtil.ProcessRunner.Run(ProcessStartInfo psi, String stdin, IProgressMonitor progress, IProgressStatus& status, TextWriter writer, ProcessPriorityClass priorityClass, Boolean forceTempfilesCleanup, Func`3 outputAndExitCodeAreGoodFunc, Boolean updateProgressPercentage) in C:\proj\skyline_24_1\pwiz_tools\Shared\CommonUtil\SystemUtil\ProcessRunner.cs:line 245
   at pwiz.BiblioSpec.BlibBuild.BuildLibrary(LibraryBuildAction libraryBuildAction, IProgressMonitor progressMonitor, IProgressStatus& status, String& commandArgs, String& messageLog, String[]& ambiguous) in C:\proj\skyline_24_1\pwiz_tools\Shared\BiblioSpec\BlibBuild.cs:line 475
   at pwiz.Skyline.Model.Lib.BiblioSpecLiteBuilder.BuildLibrary(IProgressMonitor progress) in C:\proj\skyline_24_1\pwiz_tools\Skyline\Model\Lib\BiblioSpecLiteBuilder.cs:line 163
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