Main Settings Skyline file: D:\EXPLORIS_DATA\Sys\16dez22_QC_iRT_template_Exploris.sky Folder to watch: D:\EXPLORIS_DATA\Sys_PRM_Exploris_raws Include subfolders: False Filter Type: Contains; Pattern: Sys_PRM Instrument: Thermo Remove results older than: 365 days Acquisition time: 75 minutes Panorama Settings Panorama server URL: https://panoramaweb.org/ Panorama user email: adriana.paesleme@lnbio.cnpem.br Panorama folder: LNBio - Mas Lab/System_suitability_Exploris Skyline Settings Type: SkylineDaily Path: C:\Users\bianca.pauletti\AppData\Local\Apps\2.0\0REBHT4H.3Q3\46D3ZB15.9J0\auto..tion_e4141a2a22107248_0016.0001_bc945c718eef5b27\SkylineDailyRunner.exe [12/16/2022 9:56:27 AM] Getting the acquisition date on the newest file imported into the Skyline document. [12/16/2022 9:56:27 AM] Running SkylineDailyRunner.exe with args: [12/16/2022 9:56:27 AM] --in="D:\EXPLORIS_DATA\Sys\16dez22_QC_iRT_template_Exploris.sky" --report-conflict-resolution=overwrite --report-add="C:\Users\bianca.pauletti\AppData\Local\Apps\2.0\0REBHT4H.3Q3\46D3ZB15.9J0\auto..tion_e4141a2a22107248_0016.0001_bc945c718eef5b27\FileAcquisitionTime.skyr" --report-name="AcquisitionTimes" --report-file="D:\EXPLORIS_DATA\Sys\Sys_PRM_Exploris\AcquisitionTimes.csv" [12/16/2022 9:56:29 AM] The name 'AcquisitionTimes' already exists. [12/16/2022 9:56:29 AM] Resolving conflicts by overwriting. [12/16/2022 9:56:29 AM] Success! Imported Reports from FileAcquisitionTime.skyr [12/16/2022 9:56:29 AM] Opening file... [12/16/2022 9:56:29 AM] File 16dez22_QC_iRT_template_Exploris.sky opened. [12/16/2022 9:56:30 AM] Exporting report AcquisitionTimes... [12/16/2022 9:56:30 AM] Report AcquisitionTimes exported successfully to D:\EXPLORIS_DATA\Sys\Sys_PRM_Exploris\AcquisitionTimes.csv. [12/16/2022 9:56:30 AM] SkylineDailyRunner.exe exited successfully. [12/16/2022 9:56:30 AM] The most recent acquisition date in the Skyline document is 9/3/2022 6:43:32 PM [12/16/2022 9:56:30 AM] Initializing Panorama pinger... [12/16/2022 9:56:30 AM] Running configuration... [12/16/2022 9:56:30 AM] Importing existing files... [12/16/2022 9:56:30 AM] Existing files found: 3 [12/16/2022 9:56:30 AM] 12dez22_Sys_PRM_scheduled_50cm_110min.raw is ready [12/16/2022 9:56:30 AM] Running SkylineDailyRunner.exe with args: [12/16/2022 9:56:30 AM] --in="D:\EXPLORIS_DATA\Sys\16dez22_QC_iRT_template_Exploris.sky" --import-file="D:\EXPLORIS_DATA\Sys_PRM_Exploris_raws\12dez22_Sys_PRM_scheduled_50cm_110min.raw" --import-on-or-after=9/3/2022 6:43:32 PM --save [12/16/2022 9:56:31 AM] Opening file... [12/16/2022 9:56:31 AM] File 16dez22_QC_iRT_template_Exploris.sky opened. [12/16/2022 9:56:32 AM] [12/16/2022 9:56:32 AM] Adding results... [12/16/2022 9:56:32 AM] 1. D:\EXPLORIS_DATA\Sys_PRM_Exploris_raws\12dez22_Sys_PRM_scheduled_50cm_110min.raw [12/16/2022 9:56:32 AM] [12/16/2022 9:56:36 AM] [1] 24% [12/16/2022 9:56:38 AM] [1] 34% [12/16/2022 9:56:40 AM] [1] 45% [12/16/2022 9:56:40 AM] Successfully pinged Panorama server. [12/16/2022 9:56:42 AM] [1] 59% [12/16/2022 9:56:44 AM] [12/16/2022 9:56:45 AM] Updating peak statistics [12/16/2022 9:56:45 AM] ERROR: Failure attempting to write the file D:\EXPLORIS_DATA\Sys\16dez22_QC_iRT_template_Exploris.skyd [12/16/2022 9:56:45 AM] The process cannot access the file because it is being used by another process. [12/16/2022 9:56:45 AM] ERROR: SkylineDailyRunner.exe exited with error code 2. [12/16/2022 9:56:45 AM] Adding 12dez22_Sys_PRM_scheduled_50cm_110min.raw to the re-import queue. [12/16/2022 9:56:45 AM] 13dez22_Sys_PRM_scheduled_50cm_110min.raw is ready [12/16/2022 9:56:45 AM] Running SkylineDailyRunner.exe with args: [12/16/2022 9:56:45 AM] --in="D:\EXPLORIS_DATA\Sys\16dez22_QC_iRT_template_Exploris.sky" --import-file="D:\EXPLORIS_DATA\Sys_PRM_Exploris_raws\13dez22_Sys_PRM_scheduled_50cm_110min.raw" --import-on-or-after=9/3/2022 6:43:32 PM --save [12/16/2022 9:56:46 AM] Opening file... [12/16/2022 9:56:46 AM] File 16dez22_QC_iRT_template_Exploris.sky opened. [12/16/2022 9:56:47 AM] [12/16/2022 9:56:47 AM] Adding results... [12/16/2022 9:56:47 AM] 1. D:\EXPLORIS_DATA\Sys_PRM_Exploris_raws\13dez22_Sys_PRM_scheduled_50cm_110min.raw [12/16/2022 9:56:47 AM] [12/16/2022 9:56:50 AM] [1] 21% [12/16/2022 9:56:53 AM] [1] 34% [12/16/2022 9:56:55 AM] [1] 44% [12/16/2022 9:56:57 AM] [1] 59% [12/16/2022 9:56:59 AM] [12/16/2022 9:56:59 AM] Updating peak statistics [12/16/2022 9:56:59 AM] ERROR: Failure attempting to write the file D:\EXPLORIS_DATA\Sys\16dez22_QC_iRT_template_Exploris.skyd [12/16/2022 9:56:59 AM] The process cannot access the file because it is being used by another process. [12/16/2022 9:56:59 AM] ERROR: SkylineDailyRunner.exe exited with error code 2. [12/16/2022 9:56:59 AM] Adding 13dez22_Sys_PRM_scheduled_50cm_110min.raw to the re-import queue. [12/16/2022 9:56:59 AM] 13dez22_Sys_PRM_scheduled_50cm_110min_2.raw is ready [12/16/2022 9:56:59 AM] Running SkylineDailyRunner.exe with args: [12/16/2022 9:56:59 AM] --in="D:\EXPLORIS_DATA\Sys\16dez22_QC_iRT_template_Exploris.sky" --import-file="D:\EXPLORIS_DATA\Sys_PRM_Exploris_raws\13dez22_Sys_PRM_scheduled_50cm_110min_2.raw" --import-on-or-after=9/3/2022 6:43:32 PM --save [12/16/2022 9:57:00 AM] Opening file... [12/16/2022 9:57:01 AM] File 16dez22_QC_iRT_template_Exploris.sky opened. [12/16/2022 9:57:01 AM] [12/16/2022 9:57:01 AM] Adding results... [12/16/2022 9:57:01 AM] 1. D:\EXPLORIS_DATA\Sys_PRM_Exploris_raws\13dez22_Sys_PRM_scheduled_50cm_110min_2.raw [12/16/2022 9:57:01 AM] [12/16/2022 9:57:02 AM] ERROR: Failed importing the results file D:\EXPLORIS_DATA\Sys_PRM_Exploris_raws\13dez22_Sys_PRM_scheduled_50cm_110min_2.raw. [12/16/2022 9:57:02 AM] ERROR: Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'D:\EXPLORIS_DATA\Sys_PRM_Exploris_raws\13dez22_Sys_PRM_scheduled_50cm_110min_2.raw'. [12/16/2022 9:57:02 AM] [RawFileImpl::ctor()] Corrupt RAW file D:\EXPLORIS_DATA\Sys_PRM_Exploris_raws\13dez22_Sys_PRM_scheduled_50cm_110min_2.raw ---> System.Exception: [RawFileImpl::ctor()] Corrupt RAW file D:\EXPLORIS_DATA\Sys_PRM_Exploris_raws\13dez22_Sys_PRM_scheduled_50cm_110min_2.raw [12/16/2022 9:57:02 AM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [12/16/2022 9:57:02 AM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints, Int32 preferOnlyMsLevel, Boolean combineIonMobilitySpectra, Boolean trimNativeId) in C:\proj\pwiz\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 198 [12/16/2022 9:57:02 AM] at pwiz.Skyline.Model.Results.MsDataFilePath.OpenMsDataFile(Boolean simAsSpectra, Boolean preferOnlyMs1, Boolean centroidMs1, Boolean centroidMs2, Boolean ignoreZeroIntensityPoints) in C:\proj\pwiz\pwiz_tools\Skyline\Model\Results\MsDataFilePath.cs:line 291 [12/16/2022 9:57:02 AM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in C:\proj\pwiz\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 199 [12/16/2022 9:57:02 AM] --- End of inner exception stack trace --- [12/16/2022 9:57:02 AM] [12/16/2022 9:57:02 AM] ERROR: SkylineDailyRunner.exe exited with code 2. Skyline document import failed. [12/16/2022 9:57:02 AM] ERROR: No results were imported. Skipping upload to Panorama. [12/16/2022 9:57:02 AM] Adding 13dez22_Sys_PRM_scheduled_50cm_110min_2.raw to the re-import queue. [12/16/2022 9:57:02 AM] Finished importing existing files... [12/16/2022 9:57:02 AM] Importing new files... [12/16/2022 9:57:02 AM] Waiting for files...