https://skyline.ms MacCoss Lab Software: MacCoss Lab Software site https://skyline.ms/announcements/home/software/Skyline/tools/Support/SProCoP/thread.view?rowId=46719&_print=1 Hello, I get the following error message when trying to add SProCoP as an external tool: Warning: unable to access index for repository http://cran.us.r-project.org/bin/windows/contrib/3.0 package 'qcc' is available as a source package but not as a binary Warning message: package 'qcc' is not available (for R version 3.0.2) Warning: unable to access index for repository http://cran.us.r-project.org/bin/windows/contrib/3.0 Warning message: package 'car' is not available (for R version 3.0.2) Any help or suggestions on how to fix this would be greatly appreciated. Thanks, Linda Mon May 11 11:44:41 PDT 2020 https://skyline.ms/announcements/home/software/Skyline/tools/Support/SProCoP/thread.view?rowId=43078&_print=1 What versions of car and qcc are needed to run SProCop 1.3? Fri Oct 25 13:12:56 PDT 2019 https://skyline.ms/announcements/home/software/Skyline/tools/Support/SProCoP/thread.view?rowId=31382&_print=1 Hi Skyline team, I have been trying to use SProCop for a PRM project. Unfortunately I get the following error. Any thoughts? I have attached the .sky file. Thanks Hossein 1>Error in dim(PA) = c(L, L2) : 1> dims [product 170] do not match the length of object [79] 1>Calls: tryCatch -> tryCatchList -> parse.cmdline 1>Execution halted 1> 1>Finished! Mon Sep 11 12:52:01 PDT 2017 https://skyline.ms/announcements/home/software/Skyline/tools/Support/SProCoP/thread.view?rowId=26833&_print=1 Hi all, I am trying to install SProCoP in one of my company's computer. As R is already installed, I wouldn't like to have to call IT support to install it again (they wouldn't understand a second installation requirement for the same software). So, my question is: is it possible to override R installation and go ahead with SProCoP? Thanks, Carlo Tue Jul 26 10:08:59 PDT 2016 https://skyline.ms/announcements/home/software/Skyline/tools/Support/SProCoP/thread.view?rowId=25476&_print=1 Hi, I am getting the following error when trying to use SProCoP with Skyline V 3.5 (R 3.0.2): Error in dim(PA) = c(L, L2) : dims [product 72] do not match the length of object [144] Calls: tryCatch -> tryCatchList -> parse.cmdline Execution halted Finished! Operating System: Windows 7 Professional (64-bit) Attached is the skyline file that is causing the error. Thanks for your help. Sue and Rick Fri Mar 11 09:20:39 PST 2016 https://skyline.ms/announcements/home/software/Skyline/tools/Support/SProCoP/thread.view?rowId=21566&_print=1 Hi, For untargeted small molecule work, it would be handy when one clicks on the chromatogram trace to show the MS scan spectrum that the mass of the monoisotopic peak is displayed above the peak (kind of like what happens in xcalibur). Maybe there are options for number of decimal places, maybe even chemical composition? Right now to obtain the actual mass, I have to zoom in quite closely to get the x-axis to display the m/z to 4 or 5 decimal places and then read the mass from there. Thanks! --Rick Wed May 13 06:13:32 PDT 2015 https://skyline.ms/announcements/home/software/Skyline/tools/Support/SProCoP/thread.view?rowId=20582&_print=1 Hi, I get the following error message when running SProCoP via Skyline: Error in dim(PA) = c(L, L2) : dims [product 210] do not match the length of object [240] Calls: tryCatch -> tryCatchList -> parse.cmdline Execution halted Finished! Regards, Stoyan Fri Apr 03 04:59:54 PDT 2015 https://skyline.ms/announcements/home/software/Skyline/tools/Support/SProCoP/thread.view?rowId=17482&_print=1 I try to use SProCoP1.0 on my QTOF PRM data with Skyline 2.6.0.6851 The external tool is easly install and I could generate SProCoP report but when I run SProCoP tool I have this error message: Error in colMeans(PA[1:Q1, ]) : 'x' must be an array of at least two dimensions Calls: tryCatch -> tryCatchList -> parse.cmdline -> colMeans Execution halted Finished! Jerome Mon Nov 24 04:39:40 PST 2014 https://skyline.ms/announcements/home/software/Skyline/tools/Support/SProCoP/thread.view?rowId=16367&_print=1 Hi, I've just started exploring SProCop to analyse our QC samples and am having trouble getting it to work sometimes. I've successfully loaded and analysed a few test files, but as soon as I try using a different data set (using the same settings) or loading in a few new result files into a file that worked before I get an error message: 1>Error in dim(PA) = c(L, L2) : 1> dims [product 126] do not match the length of object [105] 1>Calls: tryCatch -> tryCatchList -> parse.cmdline 1>Execution halted 1> 1>Finished! 1> Another error message I keep encountering is: Error in plot.window(...) : need finite 'ylim' values Calls: tryCatch ... parse.cmdline -> plot -> plot.default -> localWindow -> plot.window Execution halted Finished It's probably something incredibly obvious that I'm missing, but could you point me in the right direction? Thanks! Kind regards, Marcy Tue Oct 28 08:05:34 PDT 2014 https://skyline.ms/announcements/home/software/Skyline/tools/Support/SProCoP/thread.view?rowId=13592&_print=1 Hi Michael, I tried using SProCoP with an SRM data set (two traces for the analyte and one trace for the internal standard) acquired on an ABI Sciex 5500 QTRAP and couldn't make it work; when checking the SProCoP input file I noticed that the mass error column shows N/A entries. Is this a general issue with SRM data? Best regards, Andre Sun Aug 17 01:09:14 PDT 2014 https://skyline.ms/announcements/home/software/Skyline/tools/Support/SProCoP/thread.view?rowId=12846&_print=1 Hello, I keep getting the same error message when I attempt to execute SProCoP from the Tools menu. I cannot seem to figure out what I am doing wrong. Could you possibly point me in the right direction? The error message is below. Error in plot.new() : figure margins too large 1>Calls: tryCatch ... tryCatchList -> parse.cmdline -> plot -> plot.default -> plot.new 1>Execution halted 1> 1>Finished! Thank you very much for your help! Best, Clark Operating system: Windows 7 (32-bit) Skyline version: Skyline-daily 2.5.16347 SProCop version: 1.0 Thu Jul 10 16:45:31 PDT 2014 https://skyline.ms/announcements/home/software/Skyline/tools/Support/SProCoP/thread.view?rowId=12469&_print=1 Hi, I think I am doing something silly. I am wanting to use SProCoP and keep getting the following error message: Error in scan(file, what, nmax, sep, dec, quote, skip, nlines, na.strings, : line 285 did not have 8 elements Calls: tryCatch ... tryCatchList -> parse.cmdline -> read.table -> scan Execution halted Finished! Could you help please. All the best Andrew Wed Jun 25 10:46:36 PDT 2014 https://skyline.ms/announcements/home/software/Skyline/tools/Support/SProCoP/thread.view?rowId=9241&_print=1 Hi, How does SProCoP decide which runs to use to calculate threshold values e.g. If I select 3 (and I have load 20 files) how does it select which three to use as a calculator? Thanks, Brian Operating System - Windows 8 Skyline Version - 2.5.0.5675 SProCoP Version - 1.0 Tue Mar 04 04:44:25 PST 2014