MacCoss Lab Software: MacCoss Lab Software site



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    <title>MacCoss Lab Software: MacCoss Lab Software site</title>
    <link>https://skyline.ms</link>
    <description>MacCoss Lab Software: MacCoss Lab Software site</description>

    <item>
        <title>Inter-Peptide Disulfide Bridge Settings</title>
        <link>https://skyline.ms/announcements/home/software/Skyline/tools/Support/Cross-link%20Transition%20Calculator/thread.view?rowId=60414&amp;_print=1</link>
        <description>Hi,

I wanted to analyze inter-peptide disulfide bond formation, which could be treated as a CID cleavable cross-link. Could you please tell me the settings for long- and short-arm mass as well as modification A and -B for the disulfide-linked form?

Thank you and best wishes,
David</description>
        <pubDate>Wed Mar 29 06:38:37 PDT 2023</pubDate>
    </item>
    <item>
        <title>Problem_Crosslinktransitioncalculator</title>
        <link>https://skyline.ms/announcements/home/software/Skyline/tools/Support/Cross-link%20Transition%20Calculator/thread.view?rowId=35505&amp;_print=1</link>
        <description>Hi,

I installed your software and I wanted to try to test with your file &quot;input_dss.txt&quot; but it doesn&#039;t work.
I had this error message: 
 J.A.Yergey, Int. J. Mass Spectrom. Ion Phys. 1983, 52, 337-349


&quot;C:&#92;Users&#92;noura&#92;AppData&#92;Local&#92;Apps&#92;2.0&#92;7Y8H36B2.6W3&#92;4W5974KX.5A0&#92;skyl..tion_e4141a2a22107248_0004.0001_352b8c93f6ba0623&#92;Tools&#92;XLTCalc&#92;SkylineIntegration.exe&quot; 30def13f-4991-4c31-a76b-9f09affb572a
 USAGE:
         C:&#92;Users&#92;noura&#92;AppData&#92;Local&#92;Apps&#92;2.0&#92;7Y8H36B2.6W3&#92;4W5974KX.5A0&#92;skyl..tion_e4141a2a22107248_0004.0001_352b8c93f6ba0623&#92;Tools&#92;XLTCalc&#92;react2prm_web.exe [options] pepA pepB modA modB xlink-string shortArmMass longArmMass precursorCharge
     or  C:&#92;Users&#92;noura&#92;AppData&#92;Local&#92;Apps&#92;2.0&#92;7Y8H36B2.6W3&#92;4W5974KX.5A0&#92;skyl..tion_e4141a2a22107248_0004.0001_352b8c93f6ba0623&#92;Tools&#92;XLTCalc&#92;react2prm_web.exe -f /input/file.txt

   [options] specifies:
           -m               report theoretical monoisotopic precursor m/z
                            default is to report theoretical most intense isotope m/z

 Input file format:
    short_arm_mass long_arm_mass
    pepA pepB modA modB precursorCharge
    pepA pepB modA modB precursorCharge
      :    :    :    :      :

 Download example file and see documentation at http://xlinkdb.gs.washington.edu/xlinkdb/prmTransitionForm.php

 Default is to report most intense isotope precursor m/z based on:
 J.A.Yergey, Int. J. Mass Spectrom. Ion Phys. 1983, 52, 337-349


&quot;C:&#92;Users&#92;noura&#92;AppData&#92;Local&#92;Apps&#92;2.0&#92;7Y8H36B2.6W3&#92;4W5974KX.5A0&#92;skyl..tion_e4141a2a22107248_0004.0001_352b8c93f6ba0623&#92;Tools&#92;XLTCalc&#92;SkylineIntegration.exe&quot; 30def13f-4991-4c31-a76b-9f09affb572a
 USAGE:
         C:&#92;Users&#92;noura&#92;AppData&#92;Local&#92;Apps&#92;2.0&#92;7Y8H36B2.6W3&#92;4W5974KX.5A0&#92;skyl..tion_e4141a2a22107248_0004.0001_352b8c93f6ba0623&#92;Tools&#92;XLTCalc&#92;react2prm_web.exe [options] pepA pepB modA modB xlink-string shortArmMass longArmMass precursorCharge
     or  C:&#92;Users&#92;noura&#92;AppData&#92;Local&#92;Apps&#92;2.0&#92;7Y8H36B2.6W3&#92;4W5974KX.5A0&#92;skyl..tion_e4141a2a22107248_0004.0001_352b8c93f6ba0623&#92;Tools&#92;XLTCalc&#92;react2prm_web.exe -f /input/file.txt

   [options] specifies:
           -m               report theoretical monoisotopic precursor m/z
                            default is to report theoretical most intense isotope m/z

 Input file format:
    short_arm_mass long_arm_mass
    pepA pepB modA modB precursorCharge
    pepA pepB modA modB precursorCharge
      :    :    :    :      :

 Download example file and see documentation at http://xlinkdb.gs.washington.edu/xlinkdb/prmTransitionForm.php

 Default is to report most intense isotope precursor m/z based on:
 J.A.Yergey, Int. J. Mass Spectrom. Ion Phys. 1983, 52, 337-349


Could you help me?

Thank you so much,

Regards,

Nour AL TURIHI
PhD student</description>
        <pubDate>Wed Feb 28 05:19:56 PST 2018</pubDate>
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