Franziska,
The set of columns that are available in the Results Grid depends on what you have selected in the Targets tree.
I am not familiar with the AvantGardeDIA tutorial but if you are not seeing the columns you expect you are probably supposed to select something else in the Targets tree. There is a different set of columns for Transitions, Precursors and Peptides.
When you define an annotation, you can specify which type of object the annotation applies to (Proteins, Peptides, Precursors, Transitions, Precursor Results, Transition Results, and Replicates). Which type of object(s) are the annotations that you care about applied to?
-- Nick |
Hi,
Thank you, that was my bad that I couldn't locate the columns but now I can indeed add them.
In the meantime I have another AvantGarde-specific question regarding result output: is it correct that after running the GlobalRefinement module on a DIA dataset, I can export the AvantGardeDIA_Export report (again) and select only the rows where Quantitative=='True'. The areas corresponding to these rows are then my new dataset?
I understand that there are several outputs generated in the ResultsOptimization folder with scores, however it is not clear to me which score cutoffs to use etc.
Best,
Franziska |