Hi Brian,
Some time ago I shared with Nick a "BSA_DSBU_PXD027234" Skyline document from a published study that is standing in Panorama in the Data Sharing folder of the MLU-Sinz Lab together with the heavy timsTOF files. The skyline document you'll find it attached to the post, but the raw data you can either get it from ProteomeXchange or from the Panorama site.
I was able to replicate the issue I described before with the DSBU dataset. I also noticed today that every time I click "Use Results" it doubles the size of the list...I guess it is trying to add new entries instead of rewriting (?). However, I don't know why it does that only for the XL-peptides.
Thanks for the attention to this, Brian.
Sincerely,
Juan C.